Collated Gene Ontology terms

Biological process: metal ion binding(2024) zinc ion binding(2006, 2014, 2024) RNA polymerase binding(2008) transcription coregulator activity(2023) histone acetyltransferase activity(2023) chromatin binding(2023) ubiquitin protein ligase activity(2006) protein domain specific binding(2005) nucleic acid binding(2024)

Molecular function: regulation of macromolecule metabolic process2024 protein ubiquitination2024 chromatin remodeling2024 regulation of transcription by RNA polymerase II2024 transcription by RNA polymerase II2005 regulation of alternative mRNA splicing, via spliceosome2006 mRNA processing2005

Cellular component: nucleus2006, 2009, 2024 protein-containing complex2024 chromosome2024 chromatin2024 membrane2014 cytosol2009 cytoplasm2024

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 0/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 6/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 0/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 6/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A067FIL3_CITSI
Ensembl»
0.0
CISIN_1g013731mg PHD-type domain-containing protein Citrus sinensis
TI:2711 None
 
A0A1L8GJP5_XENLA
Xenbase»
0.0
phrf1.L PHD and RING finger
domain-containing protein 1 isoform X1		 Xenopus laevis
TI:8355 None
   
A0A1S4H5J1_ANOGA
EnsemblMetazoa»
0.0
Uncharacterized protein Anopheles gambiae
TI:7165 None
 
A0A1Y1I9C2_KLENI
EnsemblPlants»
0.0
KFL_002500090 Uncharacterized protein Klebsormidium nitens
TI:105231 None
 
A0A2R6VX69_MARPO
EnsemblPlants»
0.0
MARPO_YA0051 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6VXW1_MARPO
EnsemblPlants»
0.0
MARPO_1647s0001 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6WAI2_MARPO
EnsemblPlants»
0.0
MARPO_0118s0003 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6WBS4_MARPO
EnsemblPlants»
0.0
MARPO_0113s0035 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6WEU6_MARPO
EnsemblPlants»
0.0
MARPO_0100s0063 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6WL29_MARPO
EnsemblPlants»
0.0
MARPO_0079s0069 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6WLM9_MARPO
EnsemblPlants»
0.0
MARPO_0077s0053 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6WMS7_MARPO
EnsemblPlants»
0.0
MARPO_0073s0034 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6X1D9_MARPO
EnsemblPlants»
0.0
MARPO_0042s0001 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6X8L6_MARPO
EnsemblPlants»
0.0
MARPO_0030s0149 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6X8V9_MARPO
EnsemblPlants»
0.0
MARPO_0029s0086 Zinc finger PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6X9F7_MARPO
EnsemblPlants»
0.0
MARPO_0028s0044 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6XB89_MARPO
EnsemblPlants»
0.0
MARPO_0025s0067 MARPO_0082s0022 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6XFD1_MARPO
EnsemblPlants»
0.0
MARPO_0018s0013 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6XN65_MARPO
EnsemblPlants»
0.0
MARPO_0007s0009 MARPO_0068s0061 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6XN70_MARPO
EnsemblPlants»
0.0
MARPO_0007s0018 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6XQ42_MARPO
EnsemblPlants»
0.0
MARPO_0006s0235 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A2R6XUZ6_MARPO
EnsemblPlants»
0.0
MARPO_0001s0002 PHD-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A3B3HJ09_ORYLA
Ensembl»
0.0
phrf1 PHD and ring finger domains 1 Oryzias latipes
TI:8090 None
   
A0A5F7ZPL6_MACMU
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Macaca mulatta
TI:9544 None
   
A0A6I8NSH2_ORNAN
Ensembl»
0.0
PHD and ring finger domains 1 Ornithorhynchus anatinus
TI:9258 None
   
A0A6I8S7H9_XENTR
Xenbase»
0.0
phrf1 PHD and RING finger domain-containing protein 1
isoform X1 (PHD and ring finger domains 1)		 Xenopus tropicalis
TI:8364 None
   
A0A7M7P2W6_STRPU
EnsemblMetazoa»
0.0
PHD and RING finger domain-containing protein 1 Strongylocentrotus purpuratus
TI:7668 None
   
A0A8I3NQX8_CANLF
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Canis lupus
TI:9612 None
   
A0A8I6XBK8_HORVV
EnsemblPlants»
0.0
Histone-lysine N-methyltransferase Hordeum vulgare
TI:4513 None
   
A0A8J0V9T6_XENLA
Xenbase»
0.0
phrf1.S PHD and RING finger
domain-containing protein 1 isoform X1		 Xenopus laevis
TI:8355 None
   
A0A8M2BA76_DANRE
CTD»
0.0
phrf1 PHD and RING finger
domain-containing protein 1 isoform X1		 Danio rerio
TI:7955 None
   
A0A8V0ZSW0_CHICK
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Gallus gallus
TI:9031 None
   
A0A9J7KZ81_BRAFL
CTD»
0.0
LOC118413552 PHD and RING
finger domain-containing protein 1-like		 Branchiostoma floridae
TI:7739 None 		     
A0A9J7L0S5_BRAFL
CTD»
0.0
LOC118414129 Dentin sialophosphoprotein-like Branchiostoma floridae
TI:7739 None
   
A0A9J7L2L3_BRAFL
CTD»
0.0
LOC118414216 PHD and RING
finger domain-containing protein 1-like		 Branchiostoma floridae
TI:7739 None
   
A7F7S5_SCLS1
VEuPathDB»
0.0
SS1G_13655 PHD and RING finger domain-containing protein Sclerotinia sclerotiorum
TI:5180 None
 
A7US58_ANOGA
EnsemblMetazoa»
0.0
5667489 AGAP003504-PA Anopheles gambiae
TI:7165 None 		 
 
B3RLA0_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_51933 PHD and RING finger domain-containing protein 1 Trichoplax adhaerens
TI:10228 None
 
B6JZF4_SCHJY
EnsemblFungi»
0.0
SJAG_01992 CTD-binding SR-like protein rA9 Schizosaccharomyces japonicus
TI:4897 None
 
B7PBN3_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW002529 Uncharacterized protein Ixodes scapularis
TI:6945 None
 
C8VCR2_EMENI
EnsemblFungi»
0.0
ANIA_07294 PHD and RING finger
domain protein, putative (AFU_orthologue AFUA_2G16870)		 Emericella nidulans
TI:162425 None
 
D6WC02_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_05009 Uncharacterized protein Tribolium castaneum
TI:7070 None
 
E9HK85_DAPPU
EnsemblMetazoa»
0.0
DAPPUDRAFT_229111 PHD and RING finger domain-containing protein 1 Daphnia pulex
TI:6669 None
 
F6PH84_CIOIN
Ensembl»
0.0
Zinc finger protein Ciona intestinalis
TI:7719 None
   
F6SY99_CIOIN
Ensembl»
0.0
Uncharacterized protein Ciona intestinalis
TI:7719 None 		     
F6XLW3_HORSE
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Equus caballus
TI:9796 None
   
G1KQK8_ANOCA
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Anolis carolinensis
TI:28377 None
   
G3QZ45_GORGO
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Gorilla gorilla
TI:9593 None
 
G7JB04_MEDTR
EnsemblPlants»
0.0
MTR_3g095830 Histone-lysine N-methyltransferase ATXR5 Medicago truncatula
TI:3880 None
 
H2R5P2_PANTR
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Pan troglodytes
TI:9598 None
 
H9H6G6_MONDO
Ensembl»
0.0
PHD and ring finger domains 1 Monodelphis domestica
TI:13616 None
   
I3LU11_PIG
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Sus scrofa
TI:9823 None
   
M3WV62_FELCA
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Felis catus
TI:9685 None
 
PHRF1_HUMAN
Ensembl»
0.5
PHRF1 PHD and RING finger domain-containing protein 1 Homo sapiens
TI:9606 None
 
PHRF1_MOUSE
Ensembl»
0.5
Phrf1 PHD and RING finger domain-containing protein 1 Mus musculus
TI:10090 None
 
PHRF1_RAT
RGD»
3.2
Phrf1 PHD and RING finger domain-containing
protein 1 (CTD-binding SR-like protein rA9)		 Rattus norvegicus
TI:10116 None
 
Q0JD71_ORYSJ
EnsemblPlants»
0.0
Os04g0425100 Os04g0425100 protein Oryza sativa
TI:4530 None
 
Q4WZH9_ASPFU
EnsemblFungi»
0.0
AFUA_2G16870 PHD and RING finger domain protein, putative Aspergillus fumigatus
TI:746128 None
 
Q7S1Z2_NEUCR
EnsemblFungi»
0.0
NCU07561 PHD and RING finger domain-containing protein Neurospora crassa
TI:5141 None
 
Q9VNE0_DROME
FlyBase»
1.0
Dmel\CG2926 Uncharacterized protein, isoform A Drosophila melanogaster
TI:7227 None
 
T1ERR0_HELRO
EnsemblMetazoa»
0.0
20199260 Uncharacterized protein Helobdella robusta
TI:6412 None 		 
 
T1F9A4_HELRO
EnsemblMetazoa»
0.0
20205403 Set2 Rpb1 interacting domain-containing protein Helobdella robusta
TI:6412 None 		 
 
T1FQ88_HELRO
EnsemblMetazoa»
0.0
20210985 PHD-type domain-containing protein Helobdella robusta
TI:6412 None
 
T1FTY6_HELRO
EnsemblMetazoa»
0.0
20212283 Uncharacterized protein Helobdella robusta
TI:6412 None 		 
 
W5LWP0_LEPOC
Ensembl»
0.0
PHRF1 PHD and ring finger domains 1 Lepisosteus oculatus
TI:7918 None
 
YQF7_SCHPO
PomBase»
1.0
SPCC126.07c PHD and RING
finger domain-containing protein C126.07c		 Schizosaccharomyces pombe
TI:4896 None