Collated Gene Ontology terms

Biological process: DNA binding(2024) nucleotidyltransferase activity(2024) zinc ion binding(2024) metal ion binding(2024) RNA polymerase II cis-regulatory region sequence-specific DNA binding(2024) DNA-binding transcription factor activity(2024)

Molecular function: transcription by RNA polymerase II2005, 2013, 2015, 2024 ribosomal large subunit biogenesis2021 regulation of DNA-templated transcription2024 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021

Cellular component: nucleus2009, 2024 cytoplasm2015, 2018, 2024 DNA-directed RNA polymerase complex2024 membrane2024 cytosol2009 RNA polymerase complex2006 RNA polymerase II, core complex2005

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 0/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 4/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 13/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 1/4 
Harosa: 3/4 
Hacrobia: 0/0 
Plants: 0/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
H2L086_CAEEL
WormBase»
0.0
CELE_F56B3.4 F56B3.4 RNA polymerase II-associated protein
1 N-terminal domain-containing protein		 Caenorhabditis elegans
TI:6239 None
 
Q54VP8_DICDI
dictyBase»
0.0
DDB_G0280209 Uncharacterized protein Dictyostelium discoideum
TI:44689 None
 
RBA50_YEAST
SGD»
0.8
RBA50 RNA polymerase II-associated protein RBA50 (RNA
polymerase II-associated protein of 50 kDa)		 Saccharomyces cerevisiae
TI:4932 None
 
A0A8V0ZBS1_CHICK
Ensembl»
0.0
RPAP1 RNA polymerase II associated protein 1 Gallus gallus
TI:9031 None
   
RPAP1_HUMAN
Ensembl»
0.0
RPAP1 RNA polymerase II-associated protein 1 Homo sapiens
TI:9606 None
 
RPAP1_MOUSE
Ensembl»
0.0
Rpap1 RNA polymerase II-associated protein 1 Mus musculus
TI:10090 None
 
RPAP1_RAT
RGD»
0.0
Rpap1 RNA polymerase II-associated protein 1 Rattus norvegicus
TI:10116 None
 
Q9VTX1_DROME
FlyBase»
0.5
anon-69Ag FI19811p1 Drosophila melanogaster
TI:7227 None
 
RBA50_SCHPO
PomBase»
0.5
rba50 RNA polymerase II-associated protein rba50 Schizosaccharomyces pombe
TI:4896 None
 
E7FGQ5_DANRE
ZFIN»
0.0
rpap1 RNA polymerase II-associated protein 1 Danio rerio
TI:7955 None