Collated Gene Ontology terms

Biological process: histone pre-mRNA DCP binding(2009, 2021, 2024) U7 snRNA binding(2015, 2021, 2024) RNA binding(2023, 2024) snRNA binding(2002)

Molecular function: mRNA 3'-end processing by stem-loop binding and cleavage2010, 2021, 2024 positive regulation of G1/S transition of mitotic cell cycle2014, 2024 mRNA processing2010, 2024 RNA splicing2024 mRNA splicing, via spliceosome2020

Cellular component: nuclear body2010, 2021, 2023, 2024 cytoplasmic U snRNP body2010, 2021, 2024 U7 snRNP2002, 2009, 2024 Cajal body2002, 2009, 2024 nucleoplasm2013, 2023, 2024 ribonucleoprotein complex2024 nucleus2024 histone locus body2010, 2021 precatalytic spliceosome2017 membrane2024
cytoplasm2024 catalytic step 2 spliceosome2017 U6 snRNP2023 U4/U6 x U5 tri-snRNP complex2020 P-body2017 Lsm1-7-Pat1 complex2023

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 4/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 0/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 3/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A1L8HFL7_XENLA
Xenbase»
0.0
lsm10.L U7 snRNA-associated Sm-like protein LSm10 Xenopus laevis
TI:8355 None
   
A0A1Y1HWH1_KLENI
EnsemblPlants»
0.0
KFL_001320080 Sm domain-containing protein Klebsormidium nitens
TI:105231 None
 
A0A2A6BMN5_PRIPA
EnsemblMetazoa»
0.0
WBGene00100273 Sm domain-containing protein Pristionchus pacificus
TI:54126 None
 
A0A2K3D9Z0_CHLRE
EnsemblPlants»
0.0
CHLRE_10g432700v5 Sm domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
A0A4X1VY89_PIG
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Sus scrofa
TI:9823 None
   
A0A5F5XSN1_FELCA
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Felis catus
TI:9685 None
 
A0A6I8N210_ORNAN
Ensembl»
0.0
Sm domain-containing protein Ornithorhynchus anatinus
TI:9258 None
   
A0A7I4A3P4_PHYPA
EnsemblPlants»
0.0
Sm domain-containing protein Physcomitrium patens
TI:3218 None
 
A0A8I3Q5G2_CANLF
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Canis lupus
TI:9612 None
   
A0A9J7LT33_BRAFL
CTD»
0.0
LOC118422975 U7 snRNA-associated Sm-like
protein LSm10 isoform X1		 Branchiostoma floridae
TI:7739 None 		     
A1Z8C4_DROME
FlyBase»
3.1
Lsm10 Lsm10 Drosophila melanogaster
TI:7227 None
 
A4IFN1_BOVIN
Ensembl»
0.0
LSM10 LSM10 protein (LSM10, U7
small nuclear RNA associated)		 Bos taurus
TI:9913 None
 
A7SC68_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g112998 Sm domain-containing protein Nematostella vectensis
TI:45351 None
 
A8WWJ1_CAEBR
WormBase»
0.0
CBG03715 CBG_03715 Protein CBG03715 Caenorhabditis briggsae
TI:6238 None
 
B2RYU1_RAT
RGD»
3.0
Lsm10 LSM10, U7 small nuclear
RNA associated (Lsm10 protein)		 Rattus norvegicus
TI:10116 None
 
B3RWD7_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_24947 Sm domain-containing protein Trichoplax adhaerens
TI:10228 None
 
B7Q3E4_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW009006 Uncharacterized protein Ixodes scapularis
TI:6945 None 		 
 
D6WR34_TRICA
EnsemblMetazoa»
0.0
GLEAN_09983 U7 snRNA-associated Sm-like protein LSm10 Tribolium castaneum
TI:7070 None
 
E1BY33_CHICK
Ensembl»
1.5
LSM10 LSM10, U7 small nuclear RNA associated Gallus gallus
TI:9031 None
   
E9GKQ5_DAPPU
EnsemblMetazoa»
0.0
DAPPUDRAFT_304272 Sm domain-containing protein Daphnia pulex
TI:6669 None
 
F0ZAY3_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_22541 Sm domain-containing protein Dictyostelium purpureum
TI:5786 None
 
F6RB14_HORSE
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Equus caballus
TI:9796 None
   
F6V8Y0_MONDO
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Monodelphis domestica
TI:13616 None
   
F7HBM2_MACMU
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA
associated (U7 snRNA-associated Sm-like protein LSm10)		 Macaca mulatta
TI:9544 None
 
G3QLX0_GORGO
Ensembl»
0.0
LSM10, U7 small nuclear RNA associated Gorilla gorilla
TI:9593 None
 
H2M0J1_ORYLA
Ensembl»
0.0
Organic solute carrier partner 1a Oryzias latipes
TI:8090 None
   
H2PYN4_PANTR
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Pan troglodytes
TI:9598 None
 
H2Y1I9_CIOIN
Ensembl»
0.0
Sm domain-containing protein Ciona intestinalis
TI:7719 None
   
H3JEQ9_STRPU
EnsemblMetazoa»
0.0
Sm domain-containing protein Strongylocentrotus purpuratus
TI:7668 None
   
H9G4T7_ANOCA
Ensembl»
0.0
LSM10 LSM10, U7 small nuclear RNA associated Anolis carolinensis
TI:28377 None
   
LSM10_HUMAN
Ensembl»
3.6
LSM10 U7 snRNA-associated Sm-like protein LSm10 Homo sapiens
TI:9606 None
 
LSM10_MOUSE
Ensembl»
1.8
Lsm10 U7 snRNA-associated Sm-like protein LSm10 Mus musculus
TI:10090 None
 
Q28FS7_XENTR
Xenbase»
0.0
lsm10 LOC548997 protein (LSM10, U7 small nuclear
RNA associated) (U7 snRNA-associated Sm-like protein LSm10)		 Xenopus tropicalis
TI:8364 None
 
Q7YWY5_CAEEL
WormBase»
1.5
CELE_K07A1.15 K07A1.15 LSM domain-containing protein Caenorhabditis elegans
TI:6239 None
 
T1EKY1_HELRO
EnsemblMetazoa»
0.0
20197231 Sm domain-containing protein Helobdella robusta
TI:6412 None
 
W5NP19_LEPOC
Ensembl»
0.0
Organic solute carrier partner 1a Lepisosteus oculatus
TI:7918 None
 
Y1015_DICDI
dictyBase»
1.5
DDB_G0291015 Putative uncharacterized protein DDB_G0291015 Dictyostelium discoideum
TI:44689 None