Collated Gene Ontology terms

Biological process: RNA binding(2003, 2019, 2021, 2025) metal ion binding(2025) oxidoreductase activity(2025) misfolded RNA binding(2013)

Molecular function: cell projection organization2025 regulation of gene expression2019, 2021, 2025 cellular response to interferon-alpha2019, 2025 transcription by RNA polymerase III2003

Cellular component: ribonucleoprotein complex2003, 2009, 2018, 2021, 2025 cytoplasm2025 cytosol2025 protein-containing complex2025

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 0/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 4/5 
Tardigrades: 0/0 
Placozoa: 0/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 1/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 0/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 1/39 
Archea: 1/8 
Bacteria: 5/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A1S4GDU2_ANOGA
EnsemblMetazoa»
0.0
Uncharacterized protein Anopheles gambiae
TI:7165 None
 
A0A7M7PMB6_STRPU
EnsemblMetazoa»
0.0
TROVE domain-containing protein Strongylocentrotus purpuratus
TI:7668 None
   
A0A7M7RGL6_STRPU
EnsemblMetazoa»
0.0
TROVE domain-containing protein Strongylocentrotus purpuratus
TI:7668 None
   
F7AHS5_CIOIN
Ensembl»
0.0
TROVE domain-containing protein Ciona intestinalis
TI:7719 None
 
H2XWB3_CIOIN
Ensembl»
0.0
RNA-binding protein RO60
vWA domain-containing protein		 Ciona intestinalis
TI:7719 None
 
W5MKQ0_LEPOC
Ensembl»
0.0
RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Lepisosteus oculatus
TI:7918 None
 
D6X3X8_TRICA
neXtProt»
0.0
AUGUSTUS-3.0.2_11317 60 kDa SS-A/Ro ribonucleoprotein-like Protein Tribolium castaneum
TI:7070 None
 
Q8A6W0_BACTN
EnsemblBacteria»
0.0
BT_1766 Ribonucleoprotein-related protein Bacteroides thetaiotaomicron
TI:818 None
 
A0A2K3DAY9_CHLRE
neXtProt»
0.0
CHLRE_10g447800v5 TROVE domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
A0A2K3CQL0_CHLRE
euHCVdb»
0.0
CHLRE_17g725750v5 TROVE domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
A0A2K3CQP7_CHLRE
neXtProt»
0.0
CHLRE_17g726850v5 TROVE domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
B7QB92_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW012296 60 kD ribonucleoprotein ssa/ro, putative Ixodes scapularis
TI:6945 None
 
C3ZG25_BRAFL
euHCVdb»
0.0
LOC118421147 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Branchiostoma floridae
TI:7739 None
 
A9VD91_MONBE
neXtProt»
0.0
MONBRDRAFT_34670 TROVE domain-containing protein Monosiga brevicollis
TI:81824 None
 
A7RN19_NEMVE
neXtProt»
0.0
NEMVEDRAFT_v1g199545 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Nematostella vectensis
TI:45351 None
 
Q8ZVY6_PYRAE
EnsemblBacteria»
0.0
PAE2059 VWA domain-containing protein Pyrobaculum aerophilum
TI:13773 None
 
Q8ZU87_PYRAE
EnsemblBacteria»
0.0
PAE2899 VWFA domain-containing protein Pyrobaculum aerophilum
TI:13773 None
 
A0A287B6J4_PIG
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Sus scrofa
TI:9823 None
   
A0A2I2Y4R5_GORGO
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Gorilla gorilla
TI:9593 None
 
A0A2I3RSL6_PANTR
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Pan troglodytes
TI:9598 None
 
A0A8I3PKJ0_CANLF
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Canis lupus
TI:9612 None
   
A0ABI7Y3N1_FELCA
Ensembl»
0.0
RO60 TROVE domain-containing protein Felis catus
TI:9685 None
   
F1MIZ7_BOVIN
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Bos taurus
TI:9913 None
   
F6ZHD4_ORNAN
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Ornithorhynchus anatinus
TI:9258 None
   
F7AA69_HORSE
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Equus caballus
TI:9796 None
   
F7CE78_MONDO
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Monodelphis domestica
TI:13616 None
   
F7FMM5_MACMU
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Macaca mulatta
TI:9544 None
   
H2M5K6_ORYLA
Ensembl»
0.0
RO60 Ro60, Y RNA binding protein Oryzias latipes
TI:8090 None
   
H9GDQ6_ANOCA
Ensembl»
0.0
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Anolis carolinensis
TI:28377 None
   
RO60_HUMAN
Ensembl»
4.7
RO60 RNA-binding protein RO60 (60 kDa SS-A/Ro ribonucleoprotein) (60 kDa Ro protein) (60 kDa ribonucleoprotein Ro) (RoRNP) (Ro 60
kDa autoantigen) (Ro60 autoantigen) (Sjoegren syndrome antigen A2) (Sjoegren syndrome type A antigen) (SS-A) (TROVE domain family member 2)		 Homo sapiens
TI:9606 None
 
RO60_MOUSE
Ensembl»
1.5
RO60 RNA-binding protein Ro60 (60 kDa SS-A/Ro ribonucleoprotein) (60 kDa Ro
protein) (60 kDa ribonucleoprotein Ro) (RoRNP) (TROVE domain family member 2)		 Mus musculus
TI:10090 None
 
D3ZRN5_RAT
RGD»
0.5
Ro60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Rattus norvegicus
TI:10116 None
   
Q9X9W7_STRCO
euHCVdb»
0.0
SCO1905 TROVE domain-containing protein Streptomyces coelicolor
TI:1902 None
 
Q8ZLH8_SALTY
euHCVdb»
0.0
STM3521 Ribonucleoprotein related-protein Salmonella typhimurium
TI:28901 None
 
A0A8V0YF85_CHICK
Ensembl»
0.5
TROVE2 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Gallus gallus
TI:9031 None
   
A0A454Y464_PRIPA
EnsemblMetazoa»
0.0
WBGene00090448 TROVE domain-containing protein Pristionchus pacificus
TI:54126 None
   
A0A2A6BEB4_PRIPA
EnsemblMetazoa»
0.0
WBGene00092853 Rop-1 Pristionchus pacificus
TI:54126 None
   
A0A8M1N812_DANRE
ZFIN»
0.0
ro60 RNA-binding protein RO60 Danio rerio
TI:7955 None
   
F7E322_XENTR
Xenbase»
0.0
ro60 RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Xenopus tropicalis
TI:8364 None
   
RO60_XENLA
Xenbase»
0.0
ro60 RNA-binding protein RO60 (60 kDa SS-A/Ro ribonucleoprotein) (60 kDa Ro
protein) (60 kDa ribonucleoprotein Ro) (RoRNP) (TROVE domain family member 2)		 Xenopus laevis
TI:8355 None
 
A0A1L8GNJ3_XENLA
Xenbase»
0.0
ro60.L RNA-binding protein RO60 (60 kDa SS-A/Ro
ribonucleoprotein) (TROVE domain family member 2)		 Xenopus laevis
TI:8355 None
   
A8X8S9_CAEBR
WormBase»
0.0
rop-1 Protein CBR-ROP-1 Caenorhabditis briggsae
TI:6238 None
 
Q9W4R7_DROME
FlyBase»
1.5
rop-1 GH25737p (Uncharacterized protein, isoform A) Drosophila melanogaster
TI:7227 None
 
RO60_CAEEL
WormBase»
0.5
rop-1 RNA-binding protein RO60 (60
kDa SS-A/Ro ribonucleoprotein homolog)		 Caenorhabditis elegans
TI:6239 None
 
Q7UEC5_RHOBA
EnsemblBacteria»
0.0
rsr 60-kDa SS-A/Ro ribonucleoprotein homolog Rhodopirellula baltica
TI:265606 None
 
RO60_DEIRA
EnsemblBacteria»
0.0
rsr RNA-binding protein RO60 (60 kDa
SS-A/Ro ribonucleoprotein homolog) (Ro sixty-related protein)		 Deinococcus radiodurans
TI:1299 None