Collated Gene Ontology terms

Biological process: U7 snRNA binding(2010, 2015, 2017, 2024) RNA binding(2023, 2024)

Molecular function: mRNA 3'-end processing by stem-loop binding and cleavage2009, 2010, 2021, 2024 regulation of chromatin organization2021, 2024 positive regulation of G1/S transition of mitotic cell cycle2014, 2024 mRNA processing2024 mRNA splicing, via spliceosome2008, 2017 P-body assembly2017 regulation of alternative mRNA splicing, via spliceosome2006 RNA splicing2024

Cellular component: U7 snRNP2009, 2017, 2024 nucleus2006, 2009, 2024 histone pre-mRNA 3'end processing complex2009, 2013, 2024 telomerase holoenzyme complex2018, 2024 nucleoplasm2013, 2023, 2024 nuclear body2010, 2023, 2024 ribonucleoprotein complex2024 precatalytic spliceosome2017 catalytic step 2 spliceosome2017 U6 snRNP2023
U4/U6 x U5 tri-snRNP complex2020 P-body2017 Lsm1-7-Pat1 complex2023 small nuclear ribonucleoprotein complex2008 histone locus body2010 cytoplasmic U snRNP body2010

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 0/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 0/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 0/4 
Harosa: 1/4 
Hacrobia: 0/0 
Plants: 3/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
A1Z802_DROME
FlyBase»
2.3
Lsm11 FI05704p (Lsm11) Drosophila melanogaster
TI:7227 None
 
Q9GYQ8_CAEEL
WormBase»
1.0
C49H3.4 CELE_C49H3.4 LSM domain-containing protein Caenorhabditis elegans
TI:6239 None
 
A6HDQ3_RAT
RGD»
3.0
Lsm11 LSM11, U7 small nuclear
RNA associated (Lsm11 protein)		 Rattus norvegicus
TI:10116 None
 
A0A8V0YJU4_CHICK
Ensembl»
0.0
LSM11 LSM11, U7 small nuclear RNA associated Gallus gallus
TI:9031 None
   
SMDL_DICDI
dictyBase»
2.0
DDB_G0289453 Small nuclear ribonucleoprotein
Sm D-like protein		 Dictyostelium discoideum
TI:44689 None
 
A0A8M6Z9X5_DANRE
CTD»
1.0
lsm11 U7 snRNA-associated Sm-like protein LSm11 Danio rerio
TI:7955 None
   
LSM11_HUMAN
Ensembl»
5.0
LSM11 U7 snRNA-associated Sm-like protein LSm11 Homo sapiens
TI:9606 None
 
LSM11_MOUSE
Ensembl»
2.3
Lsm11 U7 snRNA-associated Sm-like protein LSm11 Mus musculus
TI:10090 None