Collated Gene Ontology terms

Biological process: RNA binding(2013, 2014, 2020, 2024) protein-macromolecule adaptor activity(2013, 2024) ubiquitin protein ligase activity(2021) myosin binding(2013) enzyme regulator activity(2011)

Molecular function: mRNA processing2023, 2024 pericentric heterochromatin formation2024 nuclear mRNA surveillance of mRNA 3'-end processing2020, 2024 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway2020, 2024 ubiquitin-dependent protein catabolic process2021 termination of RNA polymerase II transcription, poly(A)-coupled2018 regulation of mRNA 3'-end processing2011 protein ubiquitination2021 positive regulation of transcription by RNA polymerase II2018 mRNA 3'-end processing by stem-loop binding and cleavage2009

Cellular component: nucleus2009, 2011, 2018, 2022, 2024 mRNA cleavage and polyadenylation specificity factor complex2004, 2006, 2011, 2013, 2017, 2018, 2024 nucleoplasm2015, 2023, 2024 nuclear exosome focus2020, 2024 heterochromatin island2024 chromatin2020, 2024 membrane2024 cytosol2023

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 14/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 1/4 
Harosa: 3/4 
Hacrobia: 0/0 
Plants: 1/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0C9J4_PARTE
EnsemblProtists»
0.0
GSPATT00006767001 Chromosome undetermined scaffold_16,
whole genome shotgun sequence		 Paramecium tetraurelia
TI:5888 None
   
A0DGM1_PARTE
EnsemblProtists»
0.0
GSPATT00002317001 Chromosome undetermined scaffold_5,
whole genome shotgun sequence		 Paramecium tetraurelia
TI:5888 None
   
A0DPB4_PARTE
EnsemblProtists»
0.0
GSPATT00019063001 Chromosome undetermined scaffold_59,
whole genome shotgun sequence		 Paramecium tetraurelia
TI:5888 None
   
Q54IF1_DICDI
dictyBase»
0.5
fip1l1 Cleavage and polyadenylation
specificity factor FIP1		 Dictyostelium discoideum
TI:44689 None
 
F0ZDB8_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_76343 DNA2/NAM7 helicase
helicase domain-containing protein		 Dictyostelium purpureum
TI:5786 None
 
A0A803TJI7_ANOCA
Ensembl»
0.0
FIP1-like 1 protein Anolis carolinensis
TI:28377 None
     
A8BGI2_GIAIC
EnsemblProtists»
0.0
GL50803_006248 GL50803_6248 Fip1 motif-containing protein Giardia intestinalis
TI:5741 None
 
A0A164D3G3_CAEEL
WormBase»
0.0
fipp-1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Caenorhabditis elegans
TI:6239 None
 
A0A286ZNR6_PIG
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Sus scrofa
TI:9823 None
   
A0A337SM21_FELCA
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Felis catus
TI:9685 None
 
A0A3B3HPK1_ORYLA
Ensembl»
0.0
LOC101159890 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Oryzias latipes
TI:8090 None
   
A0A6I8PBD9_ORNAN
Ensembl»
0.0
Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Ornithorhynchus anatinus
TI:9258 None
   
A0A6I8Q7H9_XENTR
Xenbase»
0.0
fip1l1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Xenopus tropicalis
TI:8364 None
   
A0A7M7SWU5_STRPU
EnsemblMetazoa»
0.0
Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Strongylocentrotus purpuratus
TI:7668 None
   
A0A803T897_ANOCA
Ensembl»
0.0
fip1l1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Anolis carolinensis
TI:28377 None
   
A0A8I3RYL7_CANLF
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Canis lupus
TI:9612 None
   
A0A8J0TGS8_XENLA
Xenbase»
0.0
fip1l1.L Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Xenopus laevis
TI:8355 None
   
A0A8J1IM29_XENTR
Ensembl»
0.0
LOC105948070 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Xenopus tropicalis
TI:8364 None
   
A0A8J1LRH3_XENLA
Xenbase»
0.0
fip1l1.S Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Xenopus laevis
TI:8355 None
   
A0A8V0YCT7_CHICK
Ensembl»
0.0
EPFIP1L Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Gallus gallus
TI:9031 None
   
A0A8V0YQ64_CHICK
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Gallus gallus
TI:9031 None
   
A0A9J7LFW6_BRAFL
CTD»
0.0
LOC118419651 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Branchiostoma floridae
TI:7739 None
   
A7SNL6_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g215008 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Nematostella vectensis
TI:45351 None
 
A8WIY9_CAEBR
WormBase»
0.0
fipp-1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Caenorhabditis briggsae
TI:6238 None
 
B3S7B2_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_60103 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Trichoplax adhaerens
TI:10228 None
 
B7P5H2_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW000354 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Ixodes scapularis
TI:6945 None
 
D6WJB8_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_13053 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Tribolium castaneum
TI:7070 None
 
E1BKM0_BOVIN
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Bos taurus
TI:9913 None
   
E9G323_DAPPU
EnsemblMetazoa»
0.0
DAPPUDRAFT_222134 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Daphnia pulex
TI:6669 None
 
F6UA38_CIOIN
Ensembl»
0.0
Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Ciona intestinalis
TI:7719 None
 
F7BMQ4_ORNAN
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Ornithorhynchus anatinus
TI:9258 None
   
F7DYB4_HORSE
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Equus caballus
TI:9796 None
   
F7E5Y1_MONDO
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Monodelphis domestica
TI:13616 None
   
FIP1_DANRE
ZFIN»
0.0
fip1l1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Danio rerio
TI:7955 None
 
FIP1_MOUSE
Ensembl»
2.0
Fip1l1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Mus musculus
TI:10090 None
 
FIP1_RAT
RGD»
0.0
Fip1l1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Rattus norvegicus
TI:10116 None
 
G3SJN0_GORGO
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Gorilla gorilla
TI:9593 None
 
K7CRR8_PANTR
Ensembl»
0.0
FIP1L1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Pan troglodytes
TI:9598 None
 
Q28IP4_XENTR
Xenbase»
0.0
fip1l1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Xenopus tropicalis
TI:8364 None
 
Q5RHJ8_DANRE
ZFIN»
0.0
fip1l1a Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Danio rerio
TI:7955 None
 
Q7PXP8_ANOGA
EnsemblMetazoa»
0.0
1281662 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Anopheles gambiae
TI:7165 None
 
Q9VN31_DROME
FlyBase»
2.4
Fip1 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Drosophila melanogaster
TI:7227 None
 
T1FUQ6_HELRO
EnsemblMetazoa»
0.0
20212552 Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Helobdella robusta
TI:6412 None
 
W5N9V5_LEPOC
Ensembl»
0.0
Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Lepisosteus oculatus
TI:7918 None
 
W5NDM6_LEPOC
Ensembl»
0.0
Pre-mRNA 3'-end-processing factor
FIP1 (FIP1-like 1 protein)		 Lepisosteus oculatus
TI:7918 None
 
A0A8J1LKN7_XENLA
Xenbase»
0.0
LOC108698897 Pre-mRNA 3'-end-processing factor FIP1 Xenopus laevis
TI:8355 None
   
FIP1_HUMAN
Ensembl»
0.5
FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 (hFip1) (FIP1-like 1
protein) (Factor interacting with PAP) (Rearranged in hypereosinophilia)		 Homo sapiens
TI:9606 None
 
A7F8X6_SCLS1
EnsemblFungi»
0.0
SS1G_14057 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Sclerotinia sclerotiorum
TI:5180 None
 
A9UZ12_MONBE
EnsemblProtists»
0.0
MONBRDRAFT_8093 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Monosiga brevicollis
TI:81824 None
 
B8CF30_THAPS
EnsemblProtists»
0.0
THAPSDRAFT_11624 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Thalassiosira pseudonana
TI:35128 None
 
E3JXY9_PUCGT
EnsemblFungi»
0.0
PGTG_02375 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Puccinia graminis
TI:5297 None
 
E3K7K1_PUCGT
EnsemblFungi»
0.0
PGTG_06257 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Puccinia graminis
TI:5297 None
 
F0ZAJ1_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_96691 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Dictyostelium purpureum
TI:5786 None
 
F4PE01_BATDJ
EnsemblBacteria»
0.0
BATDEDRAFT_28399 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Batrachochytrium dendrobatidis
TI:109871 None
 
H3GML8_PHYRM
EnsemblProtists»
0.0
Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Phytophthora ramorum
TI:164328 None
 
Q5KHE4_CRYNJ
EnsemblFungi»
0.0
CNE00360 Pre-mRNA polyadenylation factor
Fip1 domain-containing protein		 Cryptococcus neoformans
TI:5207 None
 
FIP1_ASHGO
EnsemblFungi»
0.0
FIP1 Pre-mRNA polyadenylation factor FIP1 Ashbya gossypii
TI:33169 None
 
FIP1_CANAL
EnsemblFungi»
0.0
FIP1 Pre-mRNA polyadenylation factor FIP1 Candida albicans
TI:5476 None
 
FIP1_YARLI
EnsemblFungi»
0.0
FIP1 Pre-mRNA polyadenylation factor FIP1 Yarrowia lipolytica
TI:4952 None
 
FIP1_YEAST
SGD»
4.6
FIP1 Pre-mRNA polyadenylation factor FIP1 Saccharomyces cerevisiae
TI:4932 None
 
FIP1_NEUCR
EnsemblFungi»
0.0
fip-1 Pre-mRNA polyadenylation factor fip-1 Neurospora crassa
TI:5141 None
 
FIP1X_SCHPO
PomBase»
2.4
SPAC22G7.10 Pre-mRNA polyadenylation factor fip1 Schizosaccharomyces pombe
TI:4896 None
 
FIP1_ASPFU
EnsemblFungi»
0.0
fip1 Pre-mRNA polyadenylation factor fip1 Aspergillus fumigatus
TI:746128 None
 
FIP1_EMENI
EnsemblFungi»
0.0
fip1 Pre-mRNA polyadenylation factor fip1 Emericella nidulans
TI:162425 None
 
A8X7F6_CAEBR
WormBase»
0.0
CBG08806 CBG_08806 Protein CBG08806 Caenorhabditis briggsae
TI:6238 None
   
A0A2A6CCR8_PRIPA
EnsemblMetazoa»
0.0
WBGene00098815 RING-type domain-containing protein Pristionchus pacificus
TI:54126 None 		 
 
A0A2K3CVP9_CHLRE
EnsemblPlants»
0.0
CHLRE_16g671600v5 SET domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
   
A0A2K3CVQ7_CHLRE
EnsemblPlants»
0.0
CHLRE_16g671825v5 SET domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
   
A0A2K3CUY3_CHLRE
EnsemblPlants»
0.0
CHLRE_16g682750v5 TFIIS N-terminal domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
   
A0A2K3CWY4_CHLRE
EnsemblPlants»
0.0
CHLRE_15g643028v5 Uncharacterized protein Chlamydomonas reinhardtii
TI:3055 None
   
A0A2K3DRL2_CHLRE
EnsemblPlants»
0.0
CHLRE_06g310601v5 Uncharacterized protein Chlamydomonas reinhardtii
TI:3055 None
   
A0A2K3E049_CHLRE
EnsemblPlants»
0.0
CHLRE_02g074350v5 Uncharacterized protein Chlamydomonas reinhardtii
TI:3055 None
   
B7PA27_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW002376 Uncharacterized protein Ixodes scapularis
TI:6945 None
   
Q54RC2_DICDI
dictyBase»
0.0
DDB_G0283325 Uncharacterized protein Dictyostelium discoideum
TI:44689 None
 
Q55G76_DICDI
dictyBase»
0.0
DDB_G0267784 Uncharacterized protein Dictyostelium discoideum
TI:44689 None 		 
   
B6JX34_SCHJY
EnsemblFungi»
0.0
SJAG_00961 mRNA cleavage and polyadenylation
specificity factor complex subunit		 Schizosaccharomyces japonicus
TI:4897 None