Collated Gene Ontology terms

Biological process: actin filament binding(2014, 2018, 2025) actin binding(2006, 2025) cytoskeleton-nuclear membrane anchor activity(2020, 2025) protein kinase binding(2014)

Molecular function: nuclear migration2007, 2024, 2025 regulation of cell shape2012, 2025 establishment of protein localization to membrane2021, 2025 cytoskeleton organization2012, 2025 negative regulation of cell population proliferation2012, 2018 nucleus organization2014, 2025 neuron projection development2012 ovarian nurse cell to oocyte transport2023 nucleus localization2014 mitochondrion localization2014
microtubule anchoring2014 mesoderm development2006 locomotion2014 larval visceral muscle development2014 flight2014 female germline ring canal stabilization2007 endoplasmic reticulum localization2014 cell migration2009 actin filament organization2007

Cellular component: nuclear outer membrane2010, 2014, 2018, 2025 cytoplasm2001, 2007, 2020, 2025 meiotic nuclear membrane microtubule tethering complex2010, 2018, 2025 membrane2001, 2014, 2025 nuclear envelope2007, 2012, 2014, 2025 nuclear membrane2025 rough endoplasmic reticulum2025 cytoskeleton2025 sarcomere2025 organelle membrane2025
perinuclear region of cytoplasm2012, 2025 intermediate filament cytoskeleton2013, 2025 Z disc2014, 2025 microtubule organizing center2025 endomembrane system2025 actin filament2013

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 0/3 
Arthropods: 4/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 0/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 0/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 0/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 0 5 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A139WBA3_TRICA
neXtProt»
0.0
AUGUSTUS-3.0.2_34351 Uncharacterized protein Tribolium castaneum
TI:7070 None
 
A0A1D5QJN6_MACMU
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Macaca mulatta
TI:9544 None
   
A0A1D5QQ41_MACMU
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Macaca mulatta
TI:9544 None
   
A0A2I2YP70_GORGO
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Gorilla gorilla
TI:9593 None
 
A0A3B3H3T0_ORYLA
Ensembl»
0.0
Calponin-homology (CH) domain-containing protein Oryzias latipes
TI:8090 None
   
A0A3B3IEM4_ORYLA
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Oryzias latipes
TI:8090 None
   
A0A3Q1M7W6_BOVIN
Ensembl»
0.0
CLMN Calmin Bos taurus
TI:9913 None
   
A0A6I8PRZ6_XENTR
Xenbase»
0.0
syne3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Xenopus tropicalis
TI:8364 None
   
A0A7M7PWK2_STRPU
EnsemblMetazoa»
0.0
Calponin-homology (CH) domain-containing protein Strongylocentrotus purpuratus
TI:7668 None
   
A0A8I3MP64_CANLF
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Canis lupus
TI:9612 None
   
A0A8I3MPE2_CANLF
Ensembl»
0.0
SYNE3 Spectrin repeat containing nuclear
envelope family member 3		 Canis lupus
TI:9612 None
   
A0A8I5ZQ75_RAT
RGD»
2.5
Clmn Calmin Rattus norvegicus
TI:10116 None
   
A0A8J0QRS4_XENTR
Xenbase»
0.0
clmn Calmin (Calponin-like
transmembrane domain protein)		 Xenopus tropicalis
TI:8364 None
   
A0A8J0TC09_XENLA
Xenbase»
0.0
syne3.L Nesprin-3 isoform X1 Xenopus laevis
TI:8355 None
   
A0A8J0TJT9_XENLA
Xenbase»
0.0
clmn.L Calmin (Calponin-like
transmembrane domain protein)		 Xenopus laevis
TI:8355 None
   
A0A8J0TM49_XENLA
Xenbase»
0.0
syne3.S Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Xenopus laevis
TI:8355 None
   
A0A8J0TNE4_XENLA
Xenbase»
0.0
clmn.S Calmin (Calponin-like
transmembrane domain protein)		 Xenopus laevis
TI:8355 None
   
A0A8M1RE43_DANRE
ZFIN»
0.0
clmna Calmin (Calponin-like
transmembrane domain protein)		 Danio rerio
TI:7955 None
   
A0A8V0Z3B8_CHICK
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Gallus gallus
TI:9031 None
   
A0A8V0Z625_CHICK
Ensembl»
1.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Gallus gallus
TI:9031 None
   
A0A903XX19_ANOGA
EnsemblMetazoa»
0.0
Nesprin-1 Anopheles gambiae
TI:7165 None
 
A0A9J7KGD9_BRAFL
neXtProt»
0.0
LOC118404010 Uncharacterized protein LOC118404010 isoform X1 Branchiostoma floridae
TI:7739 None
   
A0A9J7KST4_BRAFL
euHCVdb»
0.0
LOC118411261 LOW QUALITY PROTEIN: nesprin-1-like Branchiostoma floridae
TI:7739 None
   
A0A9L0T5Y2_HORSE
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Equus caballus
TI:9796 None
   
A0A9L0TGF3_HORSE
Ensembl»
0.0
SYNE3 Spectrin repeat containing nuclear
envelope family member 3		 Equus caballus
TI:9796 None
   
A0AAA9SDZ4_BOVIN
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Bos taurus
TI:9913 None
   
A0ABI7XEG6_FELCA
Ensembl»
0.0
CLMN Calponin-homology (CH) domain-containing protein Felis catus
TI:9685 None
   
A0ABI7XMI5_FELCA
Ensembl»
0.0
SYNE3 KASH domain-containing protein Felis catus
TI:9685 None
   
A7SFT6_NEMVE
euHCVdb»
0.0
NEMVEDRAFT_v1g116722 Calponin-homology (CH) domain-containing protein Nematostella vectensis
TI:45351 None
 
B3SAU9_TRIAD
CTD»
0.0
TRIADDRAFT_5338 Calponin-homology (CH) domain-containing protein Trichoplax adhaerens
TI:10228 None
 
CLMN_HUMAN
Ensembl»
1.5
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Homo sapiens
TI:9606 None
 
CLMN_MOUSE
Ensembl»
3.1
Clmn Calmin (Calponin-like
transmembrane domain protein)		 Mus musculus
TI:10090 None
 
D3ZD24_RAT
RGD»
0.0
Syne3 Spectrin repeat containing, nuclear
envelope family member 3		 Rattus norvegicus
TI:10116 None
   
E9G7E9_DAPPU
euHCVdb»
0.0
DAPPUDRAFT_99613 KASH domain-containing protein Daphnia pulex
TI:6669 None
 
E9G7F1_DAPPU
euHCVdb»
0.0
DAPPUDRAFT_209558 Calponin-homology (CH) domain-containing protein Daphnia pulex
TI:6669 None
 
E9G7Y3_DAPPU
euHCVdb»
0.0
DAPPUDRAFT_238990 Uncharacterized protein Daphnia pulex
TI:6669 None
 
F1SAR6_PIG
Ensembl»
0.0
SYNE3 Spectrin repeat containing nuclear
envelope family member 3		 Sus scrofa
TI:9823 None
   
F1SAR7_PIG
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Sus scrofa
TI:9823 None
   
F6R7P7_MONDO
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Monodelphis domestica
TI:13616 None
   
F6UAC6_CIOIN
Ensembl»
0.0
Calponin-homology (CH) domain-containing protein Ciona intestinalis
TI:7719 None
 
F6WDM2_MONDO
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Monodelphis domestica
TI:13616 None
   
F7DN76_ORNAN
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Ornithorhynchus anatinus
TI:9258 None
   
F7EJP0_ORNAN
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Ornithorhynchus anatinus
TI:9258 None
   
G1KNG1_ANOCA
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Anolis carolinensis
TI:28377 None
   
G1KNH0_ANOCA
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Anolis carolinensis
TI:28377 None
   
G3R787_GORGO
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Gorilla gorilla
TI:9593 None
 
H2L3P8_ORYLA
Ensembl»
0.0
Calponin-homology (CH) domain-containing protein Oryzias latipes
TI:8090 None
   
H2M5W6_ORYLA
Ensembl»
0.0
syne3 Spectrin repeat containing, nuclear
envelope family member 3		 Oryzias latipes
TI:8090 None
   
H2MMG2_ORYLA
Ensembl»
0.0
clmnb Calponin-homology (CH) domain-containing protein Oryzias latipes
TI:8090 None
   
H2R973_PANTR
Ensembl»
0.0
CLMN Calmin (Calponin-like
transmembrane domain protein)		 Pan troglodytes
TI:9598 None
 
H9GB25_ANOCA
Ensembl»
0.0
Calponin-homology (CH) domain-containing protein Anolis carolinensis
TI:28377 None
   
K7DPQ3_PANTR
Ensembl»
0.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3)
(Nuclear envelope spectrin repeat protein 3)		 Pan troglodytes
TI:9598 None
 
MS300_DROME
FlyBase»
13.6
Msp300 Muscle-specific protein 300
kDa (Nesprin-like protein Msp300)		 Drosophila melanogaster
TI:7227 None
 
Q6DBX6_DANRE
ZFIN»
0.0
clmnb Calmin (Calponin-like
transmembrane domain protein)		 Danio rerio
TI:7955 None
 
SYNE3_HUMAN
Ensembl»
5.0
SYNE3 Nesprin-3 (KASH domain-containing protein 3) (KASH3)
(Nuclear envelope spectrin repeat protein 3)		 Homo sapiens
TI:9606 None
 
SYNE3_MOUSE
Ensembl»
5.0
Syne3 Nesprin-3 (KASH domain-containing protein 3) (KASH3)
(Nuclear envelope spectrin repeat protein 3)		 Mus musculus
TI:10090 None
 
T1EJ51_HELRO
EnsemblMetazoa»
0.0
20196601 Calponin-homology (CH) domain-containing protein Helobdella robusta
TI:6412 None
 
W5MPQ9_LEPOC
Ensembl»
0.0
Spectrin repeat containing, nuclear
envelope family member 3		 Lepisosteus oculatus
TI:7918 None
 
W5MPS2_LEPOC
Ensembl»
0.0
Calmin (Calponin-like
transmembrane domain protein)		 Lepisosteus oculatus
TI:7918 None
 
X1WGA9_DANRE
ZFIN»
1.0
syne3 Nesprin-3 (Spectrin repeat-containing, nuclear
envelope family member 3)		 Danio rerio
TI:7955 None