Collated Gene Ontology terms

Biological process: RNA binding(2024) ubiquitin protein ligase activity(2021) transcription coactivator activity(2022)

Molecular function: mRNA processing2024 RNA splicing2024 mRNA splicing, via spliceosome2010, 2013, 2024 negative regulation of gene expression2010 ubiquitin-dependent protein catabolic process2021 translation2021 regulation of metaphase plate congression2014 regulation of cell cycle2024 regulation of RNA splicing2024 protein ubiquitination2021
positive regulation of transcription by RNA polymerase II2022 metamorphosis2013 mRNA cis splicing, via spliceosome2015 female meiosis chromosome segregation2014 alternative mRNA splicing, via spliceosome2019 achiasmate meiosis I2014

Cellular component: nucleus2006, 2009, 2022, 2024 spliceosomal complex2024 cytoplasm2024 nuclear speck2013, 2024 chromatin2013, 2024 U2-type spliceosomal complex2013, 2024 precatalytic spliceosome2010 polytene chromosome2010 nucleoplasm2022 nuclear body2024
membrane2024 mediator complex2022 chromosome2024 catalytic step 2 spliceosome2010

Phylogenetic distribution

Chordates: 3/21 
Echinoderms: 0/0 
Hemichordates: 0/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 0/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 13/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 1/4 
Harosa: 3/4 
Hacrobia: 0/0 
Plants: 35/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
B3H6J5_ARATH
TAIR»
0.0
At3g49601 Pre-mRNA-splicing factor Arabidopsis thaliana
TI:3702 None
 
CWC21_YEAST
SGD»
1.6
CWC21 Pre-mRNA-splicing factor CWC21 (Complexed
with CEF1 protein 21)		 Saccharomyces cerevisiae
TI:4932 None
 
Q54YJ4_DICDI
dictyBase»
1.0
DDB_G0278209 Uncharacterized protein Dictyostelium discoideum
TI:44689 None
 
Q54EL3_DICDI
dictyBase»
0.0
DDB_G0291670 CWF21 domain-containing protein Dictyostelium discoideum
TI:44689 None
 
Q9VWH5_DROME
FlyBase»
0.0
Dmel\CG14200 Uncharacterized protein, isoform A Drosophila melanogaster
TI:7227 None
 
A8JNI2_DROME
FlyBase»
1.8
Srrm234 Serine-arginine repetitive matrix
2/3/4, isoform F		 Drosophila melanogaster
TI:7227 None
 
CWC21_SCHPO
PomBase»
1.8
cwf21 Pre-mRNA-splicing factor cwf21 (Complexed
with cdc5 protein 21)		 Schizosaccharomyces pombe
TI:4896 None
 
O46048_DROME
FlyBase»
4.8
east EG:133E12.4 protein (Enhanced adult sensory threshold, isoform
E) (Enhanced adult sensory threshold, isoform F)		 Drosophila melanogaster
TI:7227 None
   
SRRMH_CAEEL
WormBase»
0.0
rsr-2 SRRM2 protein homolog
rsr-2 (SR protein-related rsr-2)		 Caenorhabditis elegans
TI:6239 None
 
F1QLP6_DANRE
ZFIN»
0.0
zgc:110023 Serine/arginine repetitive matrix 2 Danio rerio
TI:7955 None