Collated Gene Ontology terms

Biological process: RNA binding(2007, 2024) nucleic acid binding(2024)

Molecular function: mRNA cis splicing, via spliceosome2014, 2024 mRNA processing2024 RNA splicing2024 mRNA splicing, via spliceosome2010, 2020 regulation of RNA splicing2016, 2024 alternative mRNA splicing, via spliceosome2014, 2020, 2024 DNA repair2008, 2024 regulation of alternative mRNA splicing, via spliceosome2008 compound eye morphogenesis2013 RNA splicing, via transesterification reactions2005

Cellular component: chloroplast2003, 2024 cytoplasm2021, 2024 nucleus2009, 2016, 2021, 2024 nucleoplasm2016, 2023, 2024 spliceosomal complex2024 protein-containing complex2018, 2024 precatalytic spliceosome2010, 2024 cytosol2009

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 9/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 0/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 36/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A078FC58_BRANA
EnsemblPlants»
0.0
BnaC05g23460D (rape) hypothetical
protein (BnaC05g23460D protein)		 Brassica napus
TI:3708 None
 
A0A804KDR0_MUSAM
EnsemblPlants»
0.0
GSMUA_94360.1 (wild Malaysian banana) hypothetical protein Musa acuminata
TI:4641 None
 
A0A078FCH5_BRANA
EnsemblPlants»
0.0
BnaC03g59760D BnaC03g59760D protein Brassica napus
TI:3708 None
 
A0CMP8_PARTE
EnsemblProtists»
0.0
GSPATT00008544001 Chromosome undetermined scaffold_21,
whole genome shotgun sequence		 Paramecium tetraurelia
TI:5888 None
 
A0A061G6J2_THECC
EnsemblPlants»
0.0
TCM_026902 D111/G-patch domain-containing protein Theobroma cacao
TI:3641 None
 
B9SB37_RICCO
EnsemblBacteria»
0.0
RCOM_1338760 DNA-damage repair protein drt111, putative Ricinus communis
TI:3988 None
 
A0A1U8FKU8_CAPAN
EnsemblPlants»
0.0
T459_04997 DNA-damage-repair/toleration
protein, chloroplastic		 Capsicum annuum
TI:4072 None
 
A0A1S3YX78_TOBAC
EnsemblFungi»
0.0
LOC107780693 DNA-damage-repair/toleration protein
DRT111, chloroplastic-like		 Nicotiana tabacum
TI:4097 None
   
A0A1S4C155_TOBAC
EnsemblFungi»
0.0
LOC107813967 DNA-damage-repair/toleration protein
DRT111, chloroplastic-like		 Nicotiana tabacum
TI:4097 None
   
A0A1U7YMU9_NELNU
EnsemblBacteria»
0.0
LOC104585870 DNA-damage-repair/toleration protein
DRT111, chloroplastic		 Nelumbo nucifera
TI:4432 None
 
A0A2I4GVE1_JUGRE
EnsemblPlants»
0.0
LOC109011212 DNA-damage-repair/toleration protein
DRT111, chloroplastic		 Juglans regia
TI:51240 None
 
A0A8I6XQ97_HORVV
EnsemblPlants»
0.0
DNA-damage-repair/toleration protein
DRT111, chloroplastic		 Hordeum vulgare
TI:4513 None
   
B4FLF6_MAIZE
EnsemblPlants»
0.0
ZEAMMB73_Zm00001d020765 DNA-damage-repair/toleration protein
DRT111 chloroplastic		 Zea mays
TI:4577 None
 
F6HLX4_VITVI
EnsemblPlants»
0.0
VIT_10s0003g04720 DNA-damage-repair/toleration protein
DRT111, chloroplastic		 Vitis vinifera
TI:29760 None
 
M1BWL6_SOLTU
EnsemblPlants»
0.0
102603413 DNA-damage-repair/toleration protein
DRT111, chloroplastic		 Solanum tuberosum
TI:4113 None
   
G7JHL2_MEDTR
EnsemblPlants»
0.0
11441386 DNA-damage-repair/toleration protein DRT111
(Putative splicing factor, SPF45)		 Medicago truncatula
TI:3880 None
 
DR111_ARATH
TAIR»
0.8
DRT111 DNA-damage-repair/toleration protein DRT111, chloroplastic
(REQUIRED FOR SNC4-1D protein 2)		 Arabidopsis thaliana
TI:3702 None
 
B7PLF8_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW018690 DNA-damage-repair/toleration protein DRT111, putative
(DNA-damage-repair/toleration protein DRT111, putative (Fragment))		 Ixodes scapularis
TI:6945 None
 
Q5B4Y2_EMENI
EnsemblFungi»
0.0
ANIA_04398 G-patch DNA repair protein
(Drt111), putative (AFU_orthologue AFUA_4G06840)		 Emericella nidulans
TI:162425 None
 
Q7S7F5_NEUCR
EnsemblFungi»
0.0
NCU08942 G-patch DNA repair protein Neurospora crassa
TI:5141 None
 
Q4WNT0_ASPFU
EnsemblFungi»
0.0
AFUA_4G06840 G-patch DNA repair protein (Drt111), putative Aspergillus fumigatus
TI:746128 None
 
A0A1Y1HMF6_KLENI
EnsemblPlants»
0.0
KFL_000120260 G-patch domain containing protein Klebsormidium nitens
TI:105231 None
 
A0A022RW92_ERYGU
EnsemblFungi»
0.0
MIMGU_mgv1a008327mg G-patch domain-containing protein Erythranthe guttata
TI:4155 None
 
A0A067GIY4_CITSI
Ensembl»
0.0
CISIN_1g016857mg G-patch domain-containing protein Citrus sinensis
TI:2711 None
 
A0A077RQ55_WHEAT
EnsemblPlants»
0.0
CFC21_039934 TRAES_3BF067800140CFD_c1 G-patch domain-containing protein Triticum aestivum
TI:4565 None
 
A0A0A0KP45_CUCSA
EnsemblPlants»
0.0
Csa_6G525420 G-patch domain-containing protein Cucumis sativus
TI:3659 None
 
A0A2C9UL92_MANES
EnsemblPlants»
0.0
MANES_14G122600 G-patch domain-containing protein Manihot esculenta
TI:3983 None
 
A0A2C9VN87_MANES
EnsemblPlants»
0.0
MANES_06G055100 G-patch domain-containing protein Manihot esculenta
TI:3983 None
 
A0A2K1L246_PHYPA
EnsemblPlants»
0.0
PHYPA_002895 G-patch domain-containing protein Physcomitrium patens
TI:3218 None
 
A0A2K1Y9T1_POPTR
EnsemblPlants»
0.0
POPTR_012G063600 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A2K1ZCE6_POPTR
EnsemblPlants»
0.0
POPTR_008G057200 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A2K1ZRL7_POPTR
EnsemblPlants»
0.0
POPTR_007G091500 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A2K2BUJ8_POPTR
EnsemblPlants»
0.0
POPTR_001G086500 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A2K3D7E0_CHLRE
EnsemblPlants»
0.0
CHLRE_11g467591v5 G-patch domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
A0A2R6XC85_MARPO
EnsemblPlants»
0.0
MARPO_0023s0048 G-patch domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A3B6ED36_WHEAT
EnsemblPlants»
0.0
CFC21_034112 G-patch domain-containing protein Triticum aestivum
TI:4565 None
 
A0A3B6GN29_WHEAT
EnsemblPlants»
0.0
CFC21_046006 CFC21_046009 G-patch domain-containing protein Triticum aestivum
TI:4565 None
 
A0A3N7FIU3_POPTR
EnsemblPlants»
0.0
POPTR_008G223100 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A3Q7FN25_SOLLC
EnsemblPlants»
0.0
101263271 G-patch domain-containing protein Solanum lycopersicum
TI:4081 None
   
A7EZ04_SCLS1
EnsemblFungi»
0.0
SS1G_10570 G-patch domain-containing protein Sclerotinia sclerotiorum
TI:5180 None
 
B9GGD6_POPTR
EnsemblPlants»
0.0
POPTR_001G372600 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
B9I1E7_POPTR
EnsemblPlants»
0.0
POPTR_011G098100 G-patch domain-containing protein Populus trichocarpa
TI:3694 None
 
C5Z4F1_SORBI
EnsemblPlants»
0.0
SORBI_3010G045600 G-patch domain-containing protein Sorghum bicolor
TI:4558 None
 
D8R2Z5_SELML
EnsemblPlants»
0.0
SELMODRAFT_84505 G-patch domain-containing protein Selaginella moellendorffii
TI:88036 None
 
D8TF04_SELML
EnsemblPlants»
0.0
SELMODRAFT_163366 G-patch domain-containing protein Selaginella moellendorffii
TI:88036 None
 
E3KJT4_PUCGT
EnsemblFungi»
0.0
PGTG_10718 G-patch domain-containing protein Puccinia graminis
TI:5297 None
 
I1H9K2_BRADI
EnsemblPlants»
0.0
BRADI_1g74670v3 G-patch domain-containing protein Brachypodium distachyon
TI:15368 None
 
I1KMB5_SOYBN
EnsemblPlants»
0.0
100805487 G-patch domain-containing protein Glycine max
TI:3847 None
 
I1NDG9_SOYBN
EnsemblPlants»
0.0
100800998 G-patch domain-containing protein Glycine max
TI:3847 None
 
K3XXH7_SETIT
EnsemblPlants»
0.0
101765137 G-patch domain-containing protein Setaria italica
TI:4555 None
 
M4D2R1_BRACM
EnsemblPlants»
0.0
G-patch domain-containing protein Brassica campestris
TI:3711 None
   
M4EUB1_BRACM
EnsemblPlants»
0.0
G-patch domain-containing protein Brassica campestris
TI:3711 None
   
M5WFQ2_PRUPE
EnsemblPlants»
0.0
PRUPE_4G089800 G-patch domain-containing protein Prunus persica
TI:3760 None
 
W1PI77_AMBTC
EnsemblPlants»
0.0
AMTR_s00155p00073880 G-patch domain-containing protein Amborella trichopoda
TI:13333 None
 
A0A251VLN7_HELAN
EnsemblPlants»
0.0
DRT111 Nucleotide-binding alpha-beta plait domain superfamily, splicing
factor, SPF45 (Putative D111/G-patch domain-containing protein)		 Helianthus annuus
TI:4232 None
 
Q8L460_ORYSJ
EnsemblPlants»
0.0
Os01g0526100 Os01g0526100 protein (cDNA, clone:
J100058K04, full insert sequence)		 Oryza sativa
TI:4530 None
 
A0A2I2ZBH6_GORGO
Ensembl»
0.0
RNA recognition motif domain-containing protein Gorilla gorilla
TI:9593 None
 
A0A2I2ZL22_GORGO
Ensembl»
0.0
RNA recognition motif domain-containing protein Gorilla gorilla
TI:9593 None
   
A0A2I3T4U3_PANTR
Ensembl»
0.0
RNA recognition motif domain-containing protein Pan troglodytes
TI:9598 None
 
A9VBI5_MONBE
EnsemblProtists»
0.0
MONBRDRAFT_29582 RNA recognition motif domain-containing protein Monosiga brevicollis
TI:81824 None
 
B5YLY3_THAPS
EnsemblProtists»
0.0
THAPS_10940 RNA recognition motif domain-containing protein Thalassiosira pseudonana
TI:35128 None
 
F0ZAU2_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_91335 RNA recognition motif domain-containing protein Dictyostelium purpureum
TI:5786 None
 
F4P6X4_BATDJ
EnsemblBacteria»
0.0
BATDEDRAFT_90160 RNA recognition motif domain-containing protein Batrachochytrium dendrobatidis
TI:109871 None
 
Q5KPH1_CRYNJ
EnsemblFungi»
0.0
CNA02820 RNA recognition motif domain-containing protein Cryptococcus neoformans
TI:5207 None
 
A0A2A6BDW8_PRIPA
EnsemblMetazoa»
0.0
WBGene00277625 RNA-binding motif protein 17 Pristionchus pacificus
TI:54126 None
 
Q8IKT8_PLAF7
EnsemblProtists»
0.0
PF3D7_1454000 RNA-binding protein, putative Plasmodium falciparum
TI:5833 None
 
Q55BL6_DICDI
dictyBase»
0.5
DDB_G0270450 RNA-binding region
RNP-1 domain-containing protein		 Dictyostelium discoideum
TI:44689 None
 
B3RIB1_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_19511 RRM domain-containing protein Trichoplax adhaerens
TI:10228 None
 
H3HEF3_PHYRM
EnsemblProtists»
0.0
RRM domain-containing protein Phytophthora ramorum
TI:164328 None
 
A0A0K9NN59_ZOSMR
EnsemblPlants»
0.0
ZOSMA_79G00470 Splicing factor 45 Zostera marina
TI:29655 None
 
A0A1S4H0R0_ANOGA
EnsemblMetazoa»
0.0
Splicing factor 45
(RNA-binding motif protein 17)		 Anopheles gambiae
TI:7165 None
 
A0A2I3T1W0_PANTR
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Pan troglodytes
TI:9598 None
 
A0A3B3IAL4_ORYLA
Ensembl»
0.0
rbm17 Splicing factor 45
(RNA-binding motif protein 17)		 Oryzias latipes
TI:8090 None
   
A0A3Q1M2Z2_BOVIN
Ensembl»
0.0
Splicing factor 45
(RNA-binding motif protein 17)		 Bos taurus
TI:9913 None
   
A0A7M7MY26_STRPU
EnsemblMetazoa»
0.0
Splicing factor 45
(RNA-binding motif protein 17)		 Strongylocentrotus purpuratus
TI:7668 None
   
A0A7M7T4K8_STRPU
EnsemblMetazoa»
0.0
Splicing factor 45
(RNA-binding motif protein 17)		 Strongylocentrotus purpuratus
TI:7668 None
   
A0A8I3MLP9_CANLF
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Canis lupus
TI:9612 None
   
A0A8J1MQ79_XENLA
Xenbase»
0.0
rbm17.S Splicing factor 45
(RNA-binding motif protein 17)		 Xenopus laevis
TI:8355 None
   
A0A8M2BC07_DANRE
CTD»
0.5
rbm17 Splicing factor 45
(RNA-binding motif protein 17)		 Danio rerio
TI:7955 None
   
A0A8V0XUL9_CHICK
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Gallus gallus
TI:9031 None
   
A7MB77_BOVIN
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Bos taurus
TI:9913 None
 
A7S8H1_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g186937 Splicing factor 45
(RNA-binding motif protein 17)		 Nematostella vectensis
TI:45351 None
 
A8DWR4_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g231688 Splicing factor 45
(RNA-binding motif protein 17)		 Nematostella vectensis
TI:45351 None
 
A8X0W1_CAEBR
WormBase»
0.0
rbm-17 Splicing factor 45
(RNA-binding motif protein 17)		 Caenorhabditis briggsae
TI:6238 None
 
D6WJ68_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_13083 Splicing factor 45
(RNA-binding motif protein 17)		 Tribolium castaneum
TI:7070 None
 
E9GV69_DAPPU
EnsemblMetazoa»
0.0
EOG090X0BIL Splicing factor 45
(RNA-binding motif protein 17)		 Daphnia pulex
TI:6669 None
 
F1RUL1_PIG
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Sus scrofa
TI:9823 None
 
F6UDK4_MACMU
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Macaca mulatta
TI:9544 None
 
F6WU24_HORSE
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Equus caballus
TI:9796 None
   
F6ZQQ7_CIOIN
Ensembl»
0.0
Splicing factor 45
(RNA-binding motif protein 17)		 Ciona intestinalis
TI:7719 None
 
F7CNC6_ORNAN
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Ornithorhynchus anatinus
TI:9258 None
   
F7GGT5_MONDO
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Monodelphis domestica
TI:13616 None
   
G1KE35_ANOCA
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Anolis carolinensis
TI:28377 None
   
K7W6D2_MAIZE
EnsemblPlants»
0.0
ZEAMMB73_Zm00001d045282 Splicing factor 45 Zea mays
TI:4577 None
 
M3XE89_FELCA
Ensembl»
0.0
RBM17 Splicing factor 45
(RNA-binding motif protein 17)		 Felis catus
TI:9685 None
 
Q0P3S3_XENLA
Xenbase»
0.0
rbm17.L Splicing factor 45
(RNA-binding motif protein 17)		 Xenopus laevis
TI:8355 None
 
Q20966_CAEEL
WormBase»
0.5
rbm-17 Splicing factor 45
(RNA-binding motif protein 17)		 Caenorhabditis elegans
TI:6239 None
 
Q3KQE6_XENLA
CTD»
0.0
MGC84102 Splicing factor 45
(RNA-binding motif protein 17)		 Xenopus laevis
TI:8355 None
 
Q6AY02_RAT
RGD»
1.0
Rbm17 Splicing factor 45
(RNA-binding motif protein 17)		 Rattus norvegicus
TI:10116 None
 
Q6DIQ0_XENTR
Xenbase»
0.0
rbm17 Splicing factor 45
(RNA-binding motif protein 17)		 Xenopus tropicalis
TI:8364 None
 
Q7PL83_DROME
FlyBase»
3.9
Spf45 Splicing factor 45
(RNA-binding motif protein 17)		 Drosophila melanogaster
TI:7227 None
 
T1FTQ4_HELRO
EnsemblMetazoa»
0.0
20212201 Splicing factor 45
(RNA-binding motif protein 17)		 Helobdella robusta
TI:6412 None
 
W5NF67_LEPOC
Ensembl»
0.0
Splicing factor 45
(RNA-binding motif protein 17)		 Lepisosteus oculatus
TI:7918 None
 
SPF45_HUMAN
Ensembl»
1.3
RBM17 Splicing factor 45 (45 kDa-splicing
factor) (RNA-binding motif protein 17)		 Homo sapiens
TI:9606 None
 
SPF45_MOUSE
Ensembl»
1.4
Rbm17 Splicing factor 45 (45 kDa-splicing
factor) (RNA-binding motif protein 17)		 Mus musculus
TI:10090 None
 
A0A9J7L7G5_BRAFL
CTD»
0.0
LOC118415911 Splicing factor 45-like isoform X1 Branchiostoma floridae
TI:7739 None
   
A0A3N7FLX9_POPTR
EnsemblPlants»
0.0
POPTR_010G079600 Uncharacterized protein Populus trichocarpa
TI:3694 None
 
A0A8I3PLW9_CANLF
Ensembl»
0.0
Uncharacterized protein Canis lupus
TI:9612 None
   
U7DXG8_POPTR
EnsemblPlants»
0.0
POPTR_003G008100 Uncharacterized protein Populus trichocarpa
TI:3694 None
 
YAB4_SCHPO
PomBase»
1.0
SPAC2G11.04 Uncharacterized protein C2G11.04 Schizosaccharomyces pombe
TI:4896 None