Collated Gene Ontology terms

Biological process: snoRNA binding(2005) nucleotide binding(2025) RNA binding(2014) ATP binding(2025)

Molecular function: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2017, 2025 rRNA processing2025 ribosomal small subunit biogenesis2023, 2025 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2025 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2025 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2025 maturation of SSU-rRNA2006, 2025 ribosome biogenesis2025 defense response2025

Cellular component: nucleolus2009, 2012, 2017, 2022, 2024, 2025 small-subunit processome2013, 2023, 2024, 2025 preribosome, small subunit precursor2015, 2025 90S preribosome2018, 2025 ribonucleoprotein complex2025 nucleus2017, 2018 nucleoplasm2015 sno(s)RNA-containing ribonucleoprotein complex2005 Cul4-RING E3 ubiquitin ligase complex2008

Phylogenetic distribution

Chordates: 20/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 15/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 4/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 38/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A022RE83_ERYGU
euHCVdb»
0.0
MIMGU_mgv1a006253mg BING4 C-terminal domain-containing protein Erythranthe guttata
TI:4155 None
 
A0A061DKI5_THECC
neXtProt»
0.0
TCM_002001 Transducin/WD40 repeat-like superfamily protein Theobroma cacao
TI:3641 None
 
A0A067DIN8_CITSI
euHCVdb»
0.0
CISIN_1g0463942mg BING4 C-terminal domain-containing protein Citrus sinensis
TI:2711 None
 
A0A067DK89_CITSI
neXtProt»
0.0
CISIN_1g0402741mg BING4 C-terminal domain-containing protein Citrus sinensis
TI:2711 None
 
A0A067DS51_CITSI
euHCVdb»
0.0
CISIN_1g0463941mg Uncharacterized protein Citrus sinensis
TI:2711 None 		 
 
A0A067DSB7_CITSI
neXtProt»
0.0
CISIN_1g0419161mg BING4 C-terminal domain-containing protein Citrus sinensis
TI:2711 None
 
A0A072VPQ9_MEDTR
EnsemblPlants»
0.0
25484858 Putative transcription factor WD40-like family
(U3 small nucleolar RNA-associated-like protein, putative)		 Medicago truncatula
TI:3880 None
 
A0A078F2A6_BRANA
euHCVdb»
0.0
BnaA05g28310D BnaA05g28310D protein Brassica napus
TI:3708 None
 
A0A078HX76_BRANA
neXtProt»
0.0
BnaA01g31610D BnaA01g31610D protein Brassica napus
TI:3708 None
 
A0A0A0LQI6_CUCSA
euHCVdb»
0.0
Csa_2G385060 BING4 C-terminal domain-containing protein Cucumis sativus
TI:3659 None
 
A0A0K9PMI5_ZOSMR
euHCVdb»
0.0
ZOSMA_1G02600 BING4 C-terminal domain-containing protein Zostera marina
TI:29655 None
 
A0A0K9PPY1_ZOSMR
euHCVdb»
0.0
ZOSMA_1G02590 BING4 C-terminal domain-containing protein Zostera marina
TI:29655 None
 
A0A0K9PVE6_ZOSMR
euHCVdb»
0.0
ZOSMA_158G00250 Small nucleolar
ribonucleoprotein complex subunit		 Zostera marina
TI:29655 None
 
A0A0K9PXE9_ZOSMR
euHCVdb»
0.0
ZOSMA_158G00260 BING4 C-terminal domain-containing protein Zostera marina
TI:29655 None
 
A0A1L8F3I4_XENLA
CTD»
0.0
wdr46.S WD repeat-containing protein 46 Xenopus laevis
TI:8355 None
   
A0A1S4BPU1_TOBAC
euHCVdb»
0.0
LOC107810614 U3 small nucleolar RNA-associated protein 7 Nicotiana tabacum
TI:4097 None
   
A0A1U8NHN7_GOSHI
euHCVdb»
0.0
LOC107948551 Probable U3 small
nucleolar RNA-associated protein 7		 Gossypium hirsutum
TI:3635 None
   
A0A1U8P481_GOSHI
neXtProt»
0.0
LOC107954856 Probable U3 small
nucleolar RNA-associated protein 7		 Gossypium hirsutum
TI:3635 None
   
A0A1Y1HI00_KLENI
euHCVdb»
0.0
KFL_000070390 WD40 repeat-like superfamily protein Klebsormidium nitens
TI:105231 None
 
A0A251QDJ4_PRUPE
neXtProt»
0.0
PRUPE_2G096600 BING4 C-terminal domain-containing protein Prunus persica
TI:3760 None
 
A0A251R8P3_PRUPE
euHCVdb»
0.0
PRUPE_1G365200 BING4 C-terminal domain-containing protein Prunus persica
TI:3760 None
 
A0A251V2H0_HELAN
euHCVdb»
0.0
HannXRQ_Chr04g0126221 HanXRQr2_Chr04g0189301 Putative transducin/WD40 repeat-like superfamily
protein (Transcription factor WD40-like family)		 Helianthus annuus
TI:4232 None
 
A0A287BMA8_PIG
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Sus scrofa
TI:9823 None
 
A0A287JSG0_HORVV
EnsemblPlants»
0.0
LOC123428494 BING4 C-terminal domain-containing protein Hordeum vulgare
TI:4513 None
   
A0A287N832_HORVV
EnsemblPlants»
0.0
Uncharacterized protein Hordeum vulgare
TI:4513 None 		     
A0A287N8E6_HORVV
EnsemblPlants»
0.0
LOC123447738 BING4 C-terminal domain-containing protein Hordeum vulgare
TI:4513 None
   
A0A2A6BYT2_PRIPA
EnsemblMetazoa»
0.0
WBGene00277054 Wdr-46 Pristionchus pacificus
TI:54126 None
   
A0A2C9W008_MANES
euHCVdb»
0.0
MANES_04G062300v8 BING4 C-terminal domain-containing protein Manihot esculenta
TI:3983 None
 
A0A2G2YBX6_CAPAN
neXtProt»
0.0
T459_26717 BING4 C-terminal domain-containing protein Capsicum annuum
TI:4072 None
 
A0A2G3AK35_CAPAN
euHCVdb»
0.0
T459_02479 BING4 C-terminal domain-containing protein Capsicum annuum
TI:4072 None
 
A0A2K1ZAS7_POPTR
euHCVdb»
0.0
POPTR_008G029100 BING4 C-terminal domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A2R6WK01_MARPO
neXtProt»
0.0
MARPO_0082s0024 BING4 C-terminal domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A3B5Z4R2_WHEAT
EnsemblPlants»
0.0
LOC123097893 BING4 C-terminal domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B6A0A2_WHEAT
EnsemblPlants»
0.0
LOC123175639 BING4 C-terminal domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B6HVB2_WHEAT
EnsemblPlants»
0.0
LOC123086908 BING4 C-terminal domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B6INQ5_WHEAT
EnsemblPlants»
0.0
LOC123091064 BING4 C-terminal domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B6JDJ1_WHEAT
EnsemblPlants»
0.0
LOC123096079 BING4 C-terminal domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3Q7GAP8_SOLLC
EnsemblPlants»
0.0
LOC101255588 BING4 C-terminal domain-containing protein Solanum lycopersicum
TI:4081 None
   
A0A6I8P8S4_ORNAN
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Ornithorhynchus anatinus
TI:9258 None
   
A0A6P9ERV5_JUGRE
euHCVdb»
0.0
LOC108983139 Probable U3 small nucleolar
RNA-associated protein 7 isoform X1		 Juglans regia
TI:51240 None
   
A0A7M7PNG6_STRPU
EnsemblMetazoa»
0.0
WD repeat-containing protein 46 Strongylocentrotus purpuratus
TI:7668 None
   
A0A7U2EXI6_PHANO
TubercuList»
0.0
JI435_078100 U three protein 7 Phaeosphaeria nodorum
TI:13684 None
 
A0A804JHI8_MUSAM
EnsemblPlants»
0.0
GSMUA_164010.1 (wild Malaysian banana) hypothetical protein Musa acuminata
TI:4641 None
 
A0A8I6XF93_HORVV
EnsemblPlants»
0.0
Uncharacterized protein Hordeum vulgare
TI:4513 None 		     
A0A8I6YH28_HORVV
EnsemblPlants»
0.0
Uncharacterized protein Hordeum vulgare
TI:4513 None 		     
A0A8I7BE01_HORVV
EnsemblPlants»
0.0
Uncharacterized protein Hordeum vulgare
TI:4513 None 		     
A0A8J0QU76_XENTR
Xenbase»
0.0
wdr46 WD repeat-containing protein 46 Xenopus tropicalis
TI:8364 None
   
A0A8J8XQ12_RAT
RGD»
0.5
Wdr46 WD repeat domain 46 Rattus norvegicus
TI:10116 None
   
A0A9R0HQW2_SPIOL
neXtProt»
0.0
LOC110774721 Probable U3 small
nucleolar RNA-associated protein 7		 Spinacia oleracea
TI:3562 None
   
A0A9R1XC21_LACSA
neXtProt»
0.0
LSAT_V11C500280390 BING4 C-terminal domain-containing protein Lactuca sativa
TI:4236 None
 
A0ABI8AC21_FELCA
Ensembl»
0.0
WDR46 BING4 C-terminal domain-containing protein Felis catus
TI:9685 None
   
A0DIS3_PARTE
euHCVdb»
0.0
GSPATT00017297001 BING4 C-terminal domain-containing protein Paramecium tetraurelia
TI:5888 None
 
A0DRM4_PARTE
euHCVdb»
0.0
GSPATT00019409001 BING4 C-terminal domain-containing protein Paramecium tetraurelia
TI:5888 None
 
A2E5G2_TRIV3
TubercuList»
0.0
TVAG_301400 WD repeat protein, putative Trichomonas vaginalis
TI:5722 None
 
A7EIF6_SCLS1
euHCVdb»
0.0
SS1G_05099 U three protein 7 Sclerotinia sclerotiorum
TI:5180 None
 
A7SH87_NEMVE
euHCVdb»
0.0
NEMVEDRAFT_v1g118309 WD repeat-containing protein 46 Nematostella vectensis
TI:45351 None
 
A8B2R9_GIAIC
TubercuList»
0.0
GL50803_0015513 WD-repeat protein BING4 Giardia intestinalis
TI:5741 None
 
A8IJG8_CHLRE
neXtProt»
0.0
CHLRE_12g502800v5 BING4 C-terminal domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
A8WUR9_CAEBR
WormBase»
0.0
wdr-46 Protein CBR-WDR-46 Caenorhabditis briggsae
TI:6238 None
 
A9S395_PHYPA
EnsemblPlants»
0.0
LOC112283498 BING4 C-terminal domain-containing protein Physcomitrium patens
TI:3218 None
 
A9US21_MONBE
neXtProt»
0.0
MONBRDRAFT_17530 BING4 C-terminal domain-containing protein Monosiga brevicollis
TI:81824 None
 
B3RN80_TRIAD
CTD»
0.0
TRIADDRAFT_53071 BING4 C-terminal domain-containing protein Trichoplax adhaerens
TI:10228 None
 
B4F9L8_MAIZE
EnsemblPlants»
0.0
LOC100191648 Transducin/WD40 repeat-like superfamily protein Zea mays
TI:4577 None
 
B6K832_SCHJY
TubercuList»
0.0
utp7 U3 snoRNP-associated protein Utp7 Schizosaccharomyces japonicus
TI:4897 None
 
B7PZF2_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW009107 WD-repeat protein, putative Ixodes scapularis
TI:6945 None
 
B8CFL4_THAPS
neXtProt»
0.0
THAPSDRAFT_38662 BING4 C-terminal domain-containing protein Thalassiosira pseudonana
TI:35128 None
 
B9HUX3_POPTR
euHCVdb»
0.0
POPTR_010G232500 BING4 C-terminal domain-containing protein Populus trichocarpa
TI:3694 None
 
B9SYR4_RICCO
neXtProt»
0.0
RCOM_0036030 WD-repeat protein, putative Ricinus communis
TI:3988 None
 
C3Y0U0_BRAFL
euHCVdb»
0.0
LOC118412366 WD repeat-containing protein 46 Branchiostoma floridae
TI:7739 None
 
C4M1V9_ENTH1
TubercuList»
0.0
EHI_027730 WD repeat protein Entamoeba histolytica
TI:5759 None
 
C5XSP0_SORBI
neXtProt»
0.0
SORBI_3004G157400 BING4 C-terminal domain-containing protein Sorghum bicolor
TI:4558 None
 
C5Z2J7_SORBI
neXtProt»
0.0
SORBI_3010G274600 BING4 C-terminal domain-containing protein Sorghum bicolor
TI:4558 None
 
D6WAZ0_TRICA
euHCVdb»
0.0
AUGUSTUS-3.0.2_00313 WD repeat-containing protein 46-like Protein Tribolium castaneum
TI:7070 None
 
D7UBS0_VITVI
euHCVdb»
0.0
VIT_13s0074g00030 BING4 C-terminal domain-containing protein Vitis vinifera
TI:29760 None
 
D8QPU0_SELML
neXtProt»
0.0
SELMODRAFT_402172 BING4 C-terminal domain-containing protein Selaginella moellendorffii
TI:88036 None
 
D8SKN6_SELML
neXtProt»
0.0
SELMODRAFT_119155 BING4 C-terminal domain-containing protein Selaginella moellendorffii
TI:88036 None
 
E9HCU9_DAPPU
neXtProt»
0.0
DAPPUDRAFT_61337 BING4 C-terminal domain-containing protein Daphnia pulex
TI:6669 None
 
F0ZU39_DICPU
TubercuList»
0.0
DICPUDRAFT_81631 BING4 C-terminal domain-containing protein Dictyostelium purpureum
TI:5786 None
 
F4NW83_BATDJ
euHCVdb»
0.0
BATDEDRAFT_86242 WD repeat-containing protein 46 Batrachochytrium dendrobatidis
TI:109871 None
 
F6TCX3_CIOIN
Ensembl»
0.0
BING4 C-terminal domain-containing protein Ciona intestinalis
TI:7719 None 		 
 
F6TQX6_MONDO
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Monodelphis domestica
TI:13616 None
   
F6TUQ8_MACMU
Ensembl»
0.0
WDR46 WD repeat-containing protein 46
(WD repeat-containing protein BING4)		 Macaca mulatta
TI:9544 None
   
F6Z3D8_HORSE
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Equus caballus
TI:9796 None
   
F6ZN43_CIOIN
Ensembl»
0.0
BING4 C-terminal domain-containing protein Ciona intestinalis
TI:7719 None
 
G3QUN1_GORGO
Ensembl»
0.0
WDR46 WD repeat-containing protein 46
(WD repeat-containing protein BING4)		 Gorilla gorilla
TI:9593 None
 
H2M561_ORYLA
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Oryzias latipes
TI:8090 None
   
H2QST0_PANTR
Ensembl»
0.0
WDR46 WD repeat-containing protein 46
(WD repeat-containing protein BING4)		 Pan troglodytes
TI:9598 None
 
H3GQY6_PHYRM
EnsemblProtists»
0.0
BING4 C-terminal domain-containing protein Phytophthora ramorum
TI:164328 None
 
H6QUL6_PUCGT
TubercuList»
0.0
PGTG_22453 BING4 C-terminal domain-containing protein Puccinia graminis
TI:5297 None
 
I1GLR1_BRADI
EnsemblPlants»
0.0
LOC100821902 BING4 C-terminal domain-containing protein Brachypodium distachyon
TI:15368 None
 
I1GQ81_BRADI
EnsemblPlants»
0.0
LOC100824357 BING4 C-terminal domain-containing protein Brachypodium distachyon
TI:15368 None
 
I1LCP5_SOYBN
EnsemblPlants»
0.0
LOC100786818 BING4 C-terminal domain-containing protein Glycine max
TI:3847 None
 
I1NHQ5_SOYBN
EnsemblPlants»
0.0
LOC100802940 BING4 C-terminal domain-containing protein Glycine max
TI:3847 None
 
K3XGH8_SETIT
EnsemblPlants»
0.0
BING4 C-terminal domain-containing protein Setaria italica
TI:4555 None
 
K3YRJ8_SETIT
EnsemblPlants»
0.0
LOC101785410 BING4 C-terminal domain-containing protein Setaria italica
TI:4555 None
 
M1D063_SOLTU
EnsemblPlants»
0.0
WD-repeat protein Solanum tuberosum
TI:4113 None
   
M4EM29_BRACM
EnsemblPlants»
0.0
BING4 C-terminal domain-containing protein Brassica campestris
TI:3711 None
   
M4EZ81_BRACM
EnsemblPlants»
0.0
BING4 C-terminal domain-containing protein Brassica campestris
TI:3711 None
   
Q1K5K9_NEUCR
TubercuList»
0.0
NCU01502 U three protein 7 Neurospora crassa
TI:5141 None
 
Q4X0N3_ASPFU
TubercuList»
0.0
AFUA_2G12890 U three protein 7 Aspergillus fumigatus
TI:746128 None
 
Q54VA5_DICDI
dictyBase»
1.0
wdr46 WD40 repeat-containing protein Dictyostelium discoideum
TI:44689 None
 
Q57XC9_TRYB2
TubercuList»
0.0
Tb08.26A17.590 BING4 C-terminal domain-containing protein Trypanosoma brucei
TI:5691 None
 
Q5APD0_CANAL
CGD»
0.0
CAALFM_C109710CA orf19.12298 U three protein 7 Candida albicans
TI:5476 None
 
Q5AZL5_EMENI
TubercuList»
0.0
ANIA_06265 U three protein 7 Emericella nidulans
TI:162425 None
 
Q5EA82_BOVIN
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Bos taurus
TI:9913 None
 
Q5KMT6_CRYD1
TubercuList»
0.0
CNB00540 U three protein 7 Cryptococcus deneoformans
TI:40410 None
 
Q6C287_YARLI
TubercuList»
0.0
YALI0_F09856g YALI0F09856p Yarrowia lipolytica
TI:4952 None
 
Q6DCK7_XENLA
Xenbase»
0.0
wdr46.L WD repeat-containing protein 46 Xenopus laevis
TI:8355 None
 
Q6PGU5_DANRE
ZFIN»
0.5
wdr46 WD repeat-containing protein 46 Danio rerio
TI:7955 None
 
Q75CF4_EREGS
euHCVdb»
0.0
AGOS_ACL034W U three protein 7 Eremothecium gossypii
TI:33169 None
 
Q7QB46_ANOGA
EnsemblMetazoa»
0.0
1274025 AGAP004190-PA Anopheles gambiae
TI:7165 None
 
Q8IBM7_PLAF7
TubercuList»
0.0
PF3D7_0722600 U3 small nucleolar
RNA-associated protein 7, putative		 Plasmodium falciparum
TI:5833 None
 
Q9LGT2_ORYSJ
euHCVdb»
0.0
Os01g0183100 Os01g0183100 protein (cDNA
clone:J023063M08, full insert sequence)		 Oryza sativa
TI:4530 None
 
Q9LPP3_ARATH
TAIR»
0.5
F18K10.11 F18K10.11 protein (Transducin/WD40
repeat-like superfamily protein)		 Arabidopsis thaliana
TI:3702 None
 
Q9NF84_LEIMA
TubercuList»
0.0
L6586.01 Conserved WD40 repeat domain protein Leishmania major
TI:5664 None
 
Q9W3K3_DROME
FlyBase»
0.5
Dmel\CG2260 LD41718p Drosophila melanogaster
TI:7227 None
 
T1G4A3_HELRO
EnsemblMetazoa»
0.0
20215901 WD repeat-containing protein 46 Helobdella robusta
TI:6412 None
 
UTP7_SCHPO
PomBase»
1.0
utp7 Probable U3 small nucleolar RNA-associated protein 7
(U3 snoRNA-associated protein 7) (U three protein 7)		 Schizosaccharomyces pombe
TI:4896 None
 
UTP7_YEAST
SGD»
4.3
UTP7 U3 small nucleolar RNA-associated protein 7 (U3
snoRNA-associated protein 7) (U three protein 7)		 Saccharomyces cerevisiae
TI:4932 None
 
W1PMH4_AMBTC
neXtProt»
0.0
AMTR_s00024p00216120 BING4 C-terminal domain-containing protein Amborella trichopoda
TI:13333 None
 
W5NAT9_LEPOC
Ensembl»
0.0
WD repeat-containing protein 46 Lepisosteus oculatus
TI:7918 None
 
WDR46_CAEEL
WormBase»
0.5
wdr-46 WD repeat-containing protein 46 Caenorhabditis elegans
TI:6239 None
 
WDR46_CANLF
Ensembl»
0.0
WDR46 WD repeat-containing protein 46 Canis lupus
TI:9612 None
 
WDR46_HUMAN
Ensembl»
2.4
WDR46 WD repeat-containing protein 46
(WD repeat-containing protein BING4)		 Homo sapiens
TI:9606 None
 
WDR46_MOUSE
Ensembl»
1.5
Wdr46 WD repeat-containing protein 46
(WD repeat-containing protein BING4)		 Mus musculus
TI:10090 None