Collated Gene Ontology terms

Biological process: ATP binding(2024) single-stranded DNA binding(2024) DNA binding(2024) ATP hydrolysis activity(2024) endonuclease activity(2024)

Molecular function: double-strand break repair2009, 2013, 2017, 2024 DNA synthesis involved in DNA repair2010, 2017 SOS response2024 DNA replication2024 DNA repair2024 response to UV2010, 2021 recombinational repair2021 chromosome organization2024

Cellular component: cytoplasm2024 plasma membrane2010 nucleoid2024 membrane2024 cytosol2010 chromosome2024 bacterial nucleoid2009

Phylogenetic distribution

Chordates: 0/21 
Echinoderms: 0/0 
Hemichordates: 0/1 
Annelids: 0/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 1/3 
Arthropods: 0/5 
Tardigrades: 0/0 
Placozoa: 0/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 0/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 0/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 0/39 
Archea: 4/8 
Bacteria: 29/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
A0A5P8YHV8_YERPE
EnsemblBacteria»
0.0
YPO1362 ATP-dependent endonuclease Yersinia pestis
TI:632 None
 
A5HXQ0_CLOBH
Ensembl»
0.0
recF DNA replication and repair protein RecF Clostridium botulinum
TI:1491 None
 
A8XAR0_CAEBR
WormBase»
0.0
CBG10266 CBG_10266 Protein CBG10266 Caenorhabditis briggsae
TI:6238 None
 
A9WDC4_CHLAA
EnsemblBacteria»
0.0
Caur_1875 SMC domain protein Chloroflexus aurantiacus
TI:1108 None
 
B8DYH4_DICTD
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Dictyoglomus turgidum
TI:513050 None
 
B8E2H9_DICTD
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Dictyoglomus turgidum
TI:513050 None
 
H7C6P9_BRADU
EnsemblBacteria»
0.0
blr1990 Blr1990 protein Bradyrhizobium diazoefficiens
TI:1355477 None
 
P73021_SYNY3
EnsemblBacteria»
0.0
slr1056 Slr1056 protein Synechocystis sp.
TI:1148 None
 
Q5JHA7_THEKO
EnsemblBacteria»
0.0
TK0773 Predicted ATP-dependent endonuclease, OLD family Thermococcus kodakarensis
TI:311400 None
 
Q7NCA0_GLOVI
EnsemblBacteria»
0.0
gll3079 Gll3079 protein Gloeobacter violaceus
TI:33072 None
 
Q7NEM8_GLOVI
EnsemblBacteria»
0.0
gll3851 Gll3851 protein Gloeobacter violaceus
TI:33072 None
 
Q7NJA5_GLOVI
EnsemblBacteria»
0.0
glr1927 Glr1927 protein Gloeobacter violaceus
TI:33072 None
 
Q7NJI9_GLOVI
EnsemblBacteria»
0.0
gll1843 Gll1843 protein Gloeobacter violaceus
TI:33072 None
 
Q7UED0_RHOBA
EnsemblBacteria»
0.0
RB11415 ATPase AAA-type core domain-containing protein Rhodopirellula baltica
TI:265606 None
 
Q7UEM4_RHOBA
EnsemblBacteria»
0.0
RB11247 RecF protein Rhodopirellula baltica
TI:265606 None
 
Q7UYP8_RHOBA
EnsemblBacteria»
0.0
RB457 ATPase AAA-type core domain-containing protein Rhodopirellula baltica
TI:265606 None
 
Q89TK3_BRADU
EnsemblBacteria»
0.0
bll1930 Bll1930 protein Bradyrhizobium diazoefficiens
TI:1355477 None
 
Q89TV8_BRADU
EnsemblBacteria»
0.0
blr1666 Blr1666 protein Bradyrhizobium diazoefficiens
TI:1355477 None
 
Q89W66_BRADU
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Bradyrhizobium diazoefficiens
TI:1355477 None
 
Q8EAU9_SHEON
EnsemblPlants»
0.0
sufC FeS assembly ATPase SufC Shewanella oneidensis
TI:70863 None
 
Q8F9A2_LEPIN
EnsemblBacteria»
0.0
LA_0293 DNA double-strand break repair rad50 ATPase Leptospira interrogans
TI:173 None
 
Q8P3R7_XANCP
EnsemblBacteria»
0.0
XCC4002 ATPase AAA-type core domain-containing protein Xanthomonas campestris
TI:339 None
 
Q8RG67_FUSNN
EnsemblBacteria»
0.0
FN0450 ABC transporter ATP-binding protein Fusobacterium nucleatum
TI:851 None
 
Q8RHA9_FUSNN
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Fusobacterium nucleatum
TI:851 None
 
Q8ZL33_SALTY
EnsemblBacteria»
0.0
sugR ATP binding protein Salmonella typhimurium
TI:28901 None
 
Q8ZQE6_SALTY
EnsemblBacteria»
0.0
ybjD Homology with RecF protein Salmonella typhimurium
TI:28901 None
 
Q8ZXW5_PYRAE
EnsemblBacteria»
0.0
PAE1060 Partial recF homolog Pyrobaculum aerophilum
TI:13773 None
 
Q97WW7_SACS2
EnsemblBacteria»
0.0
SSO1994 ATPase AAA-type core domain-containing protein Saccharolobus solfataricus
TI:2287 None
 
Q9I5F1_PSEAE
EnsemblBacteria»
0.0
PA0787 ATPase AAA-type core domain-containing protein Pseudomonas aeruginosa
TI:287 None
 
Q9KM45_VIBCH
EnsemblBacteria»
0.0
VC_A0544 OLD protein-like
TOPRIM domain-containing protein		 Vibrio cholerae
TI:666 None
 
Q9KPI2_VIBCH
EnsemblBacteria»
0.0
VC_2386 AAA+ ATPase domain-containing protein Vibrio cholerae
TI:666 None
 
RECF_BACCR
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Bacillus cereus
TI:1396 None
 
RECF_BACSU
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Bacillus subtilis
TI:1423 None
 
RECF_BACTN
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Bacteroides thetaiotaomicron
TI:818 None
 
RECF_CHLAA
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Chloroflexus aurantiacus
TI:1108 None
 
RECF_CHLTR
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Chlamydia trachomatis
TI:813 None
 
RECF_COXBU
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Coxiella burnetii
TI:777 None
 
RECF_DEIRA
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Deinococcus radiodurans
TI:1299 None
 
RECF_ECOLI
EnsemblBacteria»
5.0
recF DNA replication and repair protein RecF Escherichia coli
TI:562 None
 
RECF_GEOSL
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Geobacter sulfurreducens
TI:35554 None
 
RECF_GLOVI
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Gloeobacter violaceus
TI:33072 None
 
RECF_HAEIN
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Haemophilus influenzae
TI:727 None
 
RECF_LEPIN
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Leptospira interrogans
TI:173 None
 
RECF_LISMO
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Listeria monocytogenes
TI:1639 None
 
RECF_MYCTU
TubercuList»
0.0
recF DNA replication and repair protein RecF Mycobacterium tuberculosis
TI:1773 None
 
RECF_PSEAE
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Pseudomonas aeruginosa
TI:287 None
 
RECF_SALTY
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Salmonella typhimurium
TI:28901 None
 
RECF_SHEON
EnsemblPlants»
0.0
recF DNA replication and repair protein RecF Shewanella oneidensis
TI:70863 None
 
RECF_STAA8
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Staphylococcus aureus
TI:1280 None
 
RECF_STRCO
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Streptomyces coelicolor
TI:1902 None
 
RECF_STRR6
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Streptococcus pneumoniae
TI:1313 None
 
RECF_SYNY3
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Synechocystis sp.
TI:1148 None
 
RECF_VIBCH
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Vibrio cholerae
TI:666 None
 
RECF_XANCP
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Xanthomonas campestris
TI:339 None
 
RECF_YERPE
EnsemblBacteria»
0.0
recF DNA replication and repair protein RecF Yersinia pestis
TI:632 None
 
Y3544_METJA
EnsemblBacteria»
0.0
MJECL44 Uncharacterized protein MJECL44 Methanocaldococcus jannaschii
TI:2190 None
 
YBJD_ECOLI
EnsemblBacteria»
1.0
ybjD Uncharacterized protein YbjD Escherichia coli
TI:562 None