Collated Gene Ontology terms

Biological process: RNA binding(2014, 2024) snoRNA binding(2005)

Molecular function: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2018, 2024 maturation of SSU-rRNA2013, 2023, 2024 ribosomal small subunit biogenesis2023, 2024 regulation of DNA-templated transcription2012, 2024 rRNA processing2007, 2024 ribosome biogenesis2024 hepaticobiliary system process2014, 2024 positive regulation of transcription by RNA polymerase I2013, 2024 intraciliary transport involved in cilium assembly2024

Cellular component: small-subunit processome2013, 2014, 2023, 2024 t-UTP complex2013, 2018, 2024 90S preribosome2015, 2018, 2024 nucleolus2007, 2016, 2017, 2018, 2023, 2024 chromosome2016, 2024 fibrillar center2016, 2023, 2024 nucleus2009, 2017, 2024 ribonucleoprotein complex2024 nucleoplasm2015 membrane2007, 2024
organelle2024 mitotic spindle2009 ciliary tip2024 ciliary pocket collar2024 ciliary basal body2024 9+2 motile cilium2024

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 14/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 3/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 1/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
Q9XUU8_CAEEL
WormBase»
0.5
CELE_K05C4.5 K05C4.5 WD_REPEATS_REGION domain-containing protein Caenorhabditis elegans
TI:6239 None
 
A0A8M2BH80_DANRE
CTD»
2.1
cirh1a U3 small nucleolar RNA-associated
protein 4 homolog isoform X1		 Danio rerio
TI:7955 None
   
Q54BS1_DICDI
dictyBase»
0.5
cirh1a WD40 repeat-containing protein Dictyostelium discoideum
TI:44689 None
 
M9PFG1_DROME
FlyBase»
0.5
l(3)72Dn Lethal (3) 72Dn, isoform B Drosophila melanogaster
TI:7227 None
 
A0A8V0XWI9_CHICK
Ensembl»
0.0
UTP4 UTP4 small subunit processome component Gallus gallus
TI:9031 None 		     
UTP4_HUMAN
Ensembl»
3.4
UTP4 U3 small nucleolar RNA-associated protein 4
homolog (Cirhin) (UTP4 small subunit processome component)		 Homo sapiens
TI:9606 None
 
UTP4_MOUSE
Ensembl»
1.0
Utp4 U3 small nucleolar RNA-associated protein 4
homolog (Cirhin) (Testis-expressed gene 292 protein)		 Mus musculus
TI:10090 None
 
Q5I0C9_RAT
RGD»
2.0
Utp4 Cirrhosis, autosomal recessive 1A (Human)
(UTP4 small subunit processome component)		 Rattus norvegicus
TI:10116 None
 
UTP4_YEAST
SGD»
2.7
UTP4 U3 small nucleolar RNA-associated protein 4 (U3 snoRNA-associated protein 4)
(U three protein 4) (U3 protein 4 required for transcription) (t-UTP4)		 Saccharomyces cerevisiae
TI:4932 None
 
UTP4_SCHPO
PomBase»
1.0
utp4 U3 small nucleolar RNA-associated protein 4 (U3 snoRNA-associated
protein 4) (U3 protein 4 required for transcription)		 Schizosaccharomyces pombe
TI:4896 None