Collated Gene Ontology terms

Biological process: RNA binding(2014, 2025) snoRNA binding(2005)

Molecular function: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2018, 2025 regulation of DNA-templated transcription2012, 2025 rRNA processing2007, 2025 maturation of SSU-rRNA2013, 2025 ribosome biogenesis2025 DNA-templated transcription2025 ribosomal small subunit biogenesis2023, 2025 positive regulation of transcription by RNA polymerase I2013, 2025 hepaticobiliary system process2014 camera-type eye development2024

Cellular component: small-subunit processome2013, 2014, 2023, 2024, 2025 t-UTP complex2013, 2018, 2025 90S preribosome2015, 2018, 2025 nucleolus2007, 2016, 2017, 2025 chromosome2016, 2025 fibrillar center2016, 2025 ribonucleoprotein complex2025 nucleoplasm2015, 2025 nucleus2009, 2017 mitotic spindle2009
membrane2007 cytoplasm2025

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 15/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 3/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 1/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
Q6P125_DANRE
ZFIN»
2.4
utp4 Cirrhosis, autosomal recessive 1A (Cirhin) (U3 small nucleolar
RNA-associated protein 4 homolog) (UTP4 small subunit processome component)		 Danio rerio
TI:7955 None
 
M9PFG1_DROME
FlyBase»
1.0
l(3)72Dn Lethal (3) 72Dn, isoform B Drosophila melanogaster
TI:7227 None
 
Q5I0C9_RAT
RGD»
2.5
Utp4 U3 small nucleolar RNA-associated
protein 4 homolog (Cirhin)		 Rattus norvegicus
TI:10116 None
 
UTP4_HUMAN
Ensembl»
4.5
UTP4 U3 small nucleolar RNA-associated protein 4
homolog (Cirhin) (UTP4 small subunit processome component)		 Homo sapiens
TI:9606 None
 
UTP4_MOUSE
Ensembl»
3.5
Utp4 U3 small nucleolar RNA-associated protein 4
homolog (Cirhin) (Testis-expressed gene 292 protein)		 Mus musculus
TI:10090 None
 
UTP4_SCHPO
PomBase»
1.5
utp4 U3 small nucleolar RNA-associated protein 4 (U3 snoRNA-associated
protein 4) (U3 protein 4 required for transcription)		 Schizosaccharomyces pombe
TI:4896 None
 
UTP4_YEAST
SGD»
3.2
UTP4 U3 small nucleolar RNA-associated protein 4 (U3 snoRNA-associated protein 4)
(U three protein 4) (U3 protein 4 required for transcription) (t-UTP4)		 Saccharomyces cerevisiae
TI:4932 None
 
A0A8V0XWI9_CHICK
Ensembl»
1.0
UTP4 UTP4 small subunit processome component Gallus gallus
TI:9031 None
   
Q54BS1_DICDI
dictyBase»
0.5
cirh1a WD40 repeat-containing protein Dictyostelium discoideum
TI:44689 None
 
Q9XUU8_CAEEL
WormBase»
1.0
CELE_K05C4.5 K05C4.5 WD_REPEATS_REGION domain-containing protein Caenorhabditis elegans
TI:6239 None