Collated Gene Ontology terms

Biological process: RNA ligase (GTP) activity(2024) metal ion binding(2024) ligase activity(2024) GTP binding(2024) RNA ligase (ATP) activity(2014, 2018, 2024) vinculin binding(2008, 2024) microtubule motor activity(2024) microtubule binding(2024) endonuclease activity(2024) cytoskeletal motor activity(2024)
RNA ligase activity2011 RNA binding2014 DNA binding2024 ATP binding2024

Molecular function: tRNA splicing, via endonucleolytic cleavage and ligation2011, 2014, 2022, 2024 tRNA processing2021, 2024 RNA processing2024 placenta development2012, 2024 in utero embryonic development2012, 2024 RNA repair2024 vulval development2019 response to bacterium2020 response to antibiotic2019 positive regulation of tRNA processing2016
microtubule-based movement2024 intron homing2024 intein-mediated protein splicing2024 germ cell development2019

Cellular component: tRNA-splicing ligase complex2011, 2014, 2015, 2018, 2022, 2024 nucleus2014, 2015, 2022, 2023, 2024 cytoplasm2012, 2014, 2015, 2022, 2024 nucleoplasm2015, 2023, 2024 intracellular membrane-bounded organelle2023, 2024 cytosol2023, 2024 nuclear envelope2020, 2024 endoplasmic reticulum membrane2020, 2024 peptidoglycan-based cell wall2012 microtubule2024
extracellular region2010 cytoskeleton2024

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 2/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 1/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 1/4 
Harosa: 2/4 
Hacrobia: 0/0 
Plants: 4/39 
Archea: 8/8 
Bacteria: 8/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
A0A8I5YBA4_RAT
RGD»
0.0
Rtcb-ps1 3'-phosphate/5'-hydroxy nucleic acid
ligase (EC 6.5.1.8)		 Rattus norvegicus
TI:10116 None
   
F1NYI3_CHICK
Ensembl»
0.5
RTCB RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase)		 Gallus gallus
TI:9031 None
   
RTCB_CAEEL
WormBase»
2.9
rtcb-1 RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase)		 Caenorhabditis elegans
TI:6239 None
 
RTCB_DANRE
ZFIN»
1.5
rtcb RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase)		 Danio rerio
TI:7955 None
 
RTCB_DICDI
dictyBase»
1.0
DDB_G0278481 RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase)		 Dictyostelium discoideum
TI:44689 None
 
RTCB_DROME
FlyBase»
2.1
RtcB RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase)		 Drosophila melanogaster
TI:7227 None
 
RTCB_HUMAN
Ensembl»
4.8
RTCB RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase)		 Homo sapiens
TI:9606 None
 
RTCB_MOUSE
Ensembl»
2.6
Rtcb RNA-splicing ligase RtcB homolog (EC 6.5.1.8) (3'-phosphate/5'-hydroxy
nucleic acid ligase) (Focal adhesion-associated protein) (FAAP)		 Mus musculus
TI:10090 None
 
RTCB_RAT
RGD»
4.0
Rtcb RNA-splicing ligase RtcB homolog (EC
6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) (p55)		 Rattus norvegicus
TI:10116 None