Collated Gene Ontology terms

Biological process: methyltransferase activity(2024) 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity(2024)

Molecular function: mRNA splicing, via spliceosome2006, 2010, 2011, 2013, 2016, 2018, 2022, 2024 RNA splicing2014, 2024 mRNA processing2024 mRNA splice site recognition2021, 2024 cell division2024 spliceosomal complex assembly2004, 2007 RNA splicing, via transesterification reactions2005, 2007 rRNA methylation2024 positive regulation of cell population proliferation2011 nuclear migration along microfilament2014
methylation2024 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 mRNA cis splicing, via spliceosome2004 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021

Cellular component: U4/U6 x U5 tri-snRNP complex2013, 2016, 2018, 2020, 2022, 2024 U5 snRNP2000, 2005, 2006, 2013, 2016, 2017, 2024 nucleus2011, 2014, 2016, 2017, 2018, 2021, 2022, 2024 spliceosomal complex2004, 2007, 2016, 2020, 2024 nucleoplasm2013, 2023, 2024 cytosol2023, 2024 U2-type precatalytic spliceosome2018, 2024 cytoplasm2008, 2021 spliceosomal snRNP complex2016 small nuclear ribonucleoprotein complex2006
ribonucleoprotein complex2024 precatalytic spliceosome2010

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 13/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 4/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 37/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
YLS8_ARATH
TAIR»
0.0
YLS8 Thioredoxin-like protein YLS8
(Protein YELLOW-LEAF-SPECIFIC GENE 8)		 Arabidopsis thaliana
TI:3702 None
 
TXN4A_HUMAN
Ensembl»
3.2
TXNL4A Thioredoxin-like protein 4A (DIM1 protein homolog) (Spliceosomal U5
snRNP-specific 15 kDa protein) (Thioredoxin-like U5 snRNP protein U5-15kD)		 Homo sapiens
TI:9606 None
 
TXN4B_HUMAN
Ensembl»
0.0
TXNL4B Thioredoxin-like protein 4B (Dim1-like protein) Homo sapiens
TI:9606 None
 
TXN4B_MOUSE
Ensembl»
1.0
Txnl4b Thioredoxin-like protein 4B Mus musculus
TI:10090 None
 
TXN4A_MOUSE
Ensembl»
0.5
Txnl4a Thioredoxin-like protein 4A (DIM1 protein homolog) (Spliceosomal U5
snRNP-specific 15 kDa protein) (Thioredoxin-like U5 snRNP protein U5-15kD)		 Mus musculus
TI:10090 None
 
DIB1_YEAST
SGD»
1.4
DIB1 Spliceosomal protein DIB1 Saccharomyces cerevisiae
TI:4932 None
 
DIMI_SCHPO
PomBase»
0.5
dim1 Mitosis protein dim1 Schizosaccharomyces pombe
TI:4896 None
 
Q3B728_DANRE
ZFIN»
0.0
zgc:123253 Thioredoxin-like protein Danio rerio
TI:7955 None
 
Q5XJ58_DANRE
ZFIN»
0.0
zgc:103632 Thioredoxin-like protein Danio rerio
TI:7955 None
 
Q6NMD4_ARATH
TAIR»
0.8
At3g24730 At3g24730 (mRNA splicing
factor, thioredoxin-like U5 snRNP)		 Arabidopsis thaliana
TI:3702 None
 
Q8SZ87_DROME
FlyBase»
1.5
Dim1 Thioredoxin-like protein Drosophila melanogaster
TI:7227 None
 
L8E6I4_CAEEL
WormBase»
0.0
dib-1 Thioredoxin-like protein Caenorhabditis elegans
TI:6239 None
 
TXN4A_DICDI
dictyBase»
0.5
txnl4a Thioredoxin-like protein 4A homolog Dictyostelium discoideum
TI:44689 None
 
A0A8I6ABF0_RAT
RGD»
0.0
ENSRNOG00000069332 Uncharacterized protein Rattus norvegicus
TI:10116 None
   
A0A8V0XYC1_CHICK
Ensembl»
0.0
TXNL4A Thioredoxin like 4A Gallus gallus
TI:9031 None
   
Q5FVI5_RAT
RGD»
0.0
Txnl4b Thioredoxin-like protein Rattus norvegicus
TI:10116 None