Collated Gene Ontology terms

Biological process: RNA binding(2019, 2024)

Molecular function: RNA metabolic process2013, 2015, 2019, 2024 regulation of translation2024 post-transcriptional regulation of gene expression2016 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 mRNA stabilization2020

Cellular component: cytoplasm2018, 2022, 2024 nucleus2015, 2018, 2024 cytoplasmic stress granule2017, 2020, 2024 membrane2024

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 2/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 8/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 2/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 34/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
W1NXY9_AMBTC
EnsemblPlants»
0.0
AMTR_s00088p00108420 AD domain-containing protein Amborella trichopoda
TI:13333 None 		 
 
A0A803TRN5_ANOCA
Ensembl»
0.0
lsm12 LSM12 homolog Anolis carolinensis
TI:28377 None
   
Q7QK61_ANOGA
EnsemblMetazoa»
0.0
1269387 AGAP002167-PA (AGAP002167-PB) Anopheles gambiae
TI:7165 None 		 
 
F4I5D2_ARATH
TAIR»
0.0
At1g70220 RNA-processing, Lsm domain-containing protein Arabidopsis thaliana
TI:3702 None
 
Q8L466_ARATH
TAIR»
0.0
At1g24050 At1g24050/T23E23_11 (RNA-processing,
Lsm domain-containing protein)		 Arabidopsis thaliana
TI:3702 None 		 
 
Q74Z66_ASHGO
EnsemblFungi»
0.0
AGOS_AGR340W AGR340Wp Ashbya gossypii
TI:33169 None
 
Q4WN04_ASPFU
EnsemblFungi»
0.0
AFUA_6G08070 AD domain-containing protein Aspergillus fumigatus
TI:746128 None 		 
 
F4NUY9_BATDJ
EnsemblBacteria»
0.0
BATDEDRAFT_85462 AD domain-containing protein Batrachochytrium dendrobatidis
TI:109871 None 		 
 
LSM12_BOVIN
Ensembl»
0.0
LSM12 Protein LSM12 Bos taurus
TI:9913 None
 
A0A2K2D5U1_BRADI
EnsemblPlants»
0.0
100839097 AD domain-containing protein Brachypodium distachyon
TI:15368 None 		 
 
A0A9J7LTT0_BRAFL
CTD»
0.0
LOC118424084 Protein LSM12 homolog A-like Branchiostoma floridae
TI:7739 None 		     
A0A078FV15_BRANA
EnsemblPlants»
0.0
BnaA09g29820D BnaA09g29820D protein Brassica napus
TI:3708 None 		 
 
A0A078J658_BRANA
EnsemblPlants»
0.0
BnaAnng16350D BnaAnng16350D protein Brassica napus
TI:3708 None 		 
 
A0A078J772_BRANA
EnsemblPlants»
0.0
BnaC05g50800D BnaC05g50800D protein Brassica napus
TI:3708 None 		 
 
A0A078JPG6_BRANA
EnsemblPlants»
0.0
BnaAnng24790D BnaAnng24790D protein Brassica napus
TI:3708 None 		 
 
M4CUK8_BRACM
EnsemblPlants»
0.0
AD domain-containing protein Brassica campestris
TI:3711 None 		     
M4D7F5_BRACM
EnsemblPlants»
0.0
AD domain-containing protein Brassica campestris
TI:3711 None 		     
A0A486WUL5_CAEEL
WormBase»
0.0
CELE_M142.5 M142.5 LSM12 anticodon-binding
domain-containing protein		 Caenorhabditis elegans
TI:6239 None 		 
 
A8XSB3_CAEBR
WormBase»
0.0
CBG18275 CBG_18275 Protein CBG18275 Caenorhabditis briggsae
TI:6238 None 		 
 
Q59LZ7_CANAL
EnsemblFungi»
0.0
CAALFM_C702660CA orf19.11182 LSM12 anticodon-binding
domain-containing protein		 Candida albicans
TI:5476 None
 
A0A8I3NCM8_CANLF
Ensembl»
0.0
LSM12 LSM12 homolog Canis lupus
TI:9612 None
   
A8ICM2_CHLRE
EnsemblPlants»
0.0
CHLRE_10g421850v5 AD domain-containing protein Chlamydomonas reinhardtii
TI:3055 None 		 
 
H2XQH9_CIOIN
Ensembl»
0.0
Protein yippee-like Ciona intestinalis
TI:7719 None 		 
 
A0A067H4U6_CITSI
Ensembl»
0.0
CISIN_1g030131mg AD domain-containing protein Citrus sinensis
TI:2711 None 		 
 
A0A0A0KQA9_CUCSA
EnsemblPlants»
0.0
Csa_5G603270 AD domain-containing protein Cucumis sativus
TI:3659 None 		 
 
LS12A_DANRE
ZFIN»
0.0
lsm12a Protein LSM12 homolog A Danio rerio
TI:7955 None
 
LS12B_DANRE
ZFIN»
0.0
lsm12b Protein LSM12 homolog B Danio rerio
TI:7955 None
 
E9GAV9_DAPPU
EnsemblMetazoa»
0.0
DAPPUDRAFT_301867 AD domain-containing protein Daphnia pulex
TI:6669 None 		 
 
F0ZNA9_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_88261 AD domain-containing protein Dictyostelium purpureum
TI:5786 None 		 
 
Q55BQ9_DICDI
dictyBase»
0.0
DDB_G0270402 AD domain-containing protein Dictyostelium discoideum
TI:44689 None 		 
 
HEZ_DROME
FlyBase»
0.0
Hez Protein Hezron (Protein LSM12 homolog B) Drosophila melanogaster
TI:7227 None
 
LSM12_DROME
FlyBase»
0.5
Lsm12a LSM12 homolog A Drosophila melanogaster
TI:7227 None
 
C8V620_EMENI
EnsemblFungi»
0.0
ANIA_03955 AD domain-containing protein Emericella nidulans
TI:162425 None 		 
 
F6YE35_HORSE
Ensembl»
0.0
LSM12 LSM12 homolog Equus caballus
TI:9796 None
   
A0A022Q7J8_ERYGU
EnsemblFungi»
0.0
MIMGU_mgv1a014542mg AD domain-containing protein Erythranthe guttata
TI:4155 None 		 
 
A0A2I2UQ30_FELCA
Ensembl»
0.0
LSM12 LSM12 homolog Felis catus
TI:9685 None
 
A0A8V0ZVW5_CHICK
Ensembl»
0.0
LSM12 LSM12 homolog Gallus gallus
TI:9031 None 		     
LSM12_CHICK
Ensembl»
0.0
LSM12 Protein LSM12 Gallus gallus
TI:9031 None
 
I1KXJ7_SOYBN
EnsemblPlants»
0.0
100499950 AD domain-containing protein Glycine max
TI:3847 None 		 
 
I1N1D7_SOYBN
EnsemblPlants»
0.0
GLYMA_18G133800 AD domain-containing protein Glycine max
TI:3847 None 		 
 
A0A2I2Y1P3_GORGO
Ensembl»
0.0
LSM12 homolog Gorilla gorilla
TI:9593 None
 
A0A1U8NZC6_GOSHI
Ensembl»
0.0
LOC107952762 Protein LSM12 homolog Gossypium hirsutum
TI:3635 None 		     
A0A1U8PPZ9_GOSHI
Ensembl»
0.0
LOC107961671 Protein LSM12 homolog Gossypium hirsutum
TI:3635 None 		     
A0A251UYF2_HELAN
EnsemblPlants»
0.0
HannXRQ_Chr04g0103681 HanXRQr2_Chr12g0562981 Anticodon-binding domain, protein Lsm12
(Putative RNA-processing, Lsm domain-containing protein)		 Helianthus annuus
TI:4232 None 		 
 
T1EY68_HELRO
EnsemblMetazoa»
0.0
20201518 AD domain-containing protein Helobdella robusta
TI:6412 None 		 
 
LSM12_HUMAN
Ensembl»
0.0
LSM12 Protein LSM12 Homo sapiens
TI:9606 None
 
B7PUR0_IXOSC
EnsemblMetazoa»
0.0
8031641 AD domain-containing protein Ixodes scapularis
TI:6945 None 		 
 
A0A2I4E1M4_JUGRE
EnsemblPlants»
0.0
LOC108985453 Protein LSM12 homolog Juglans regia
TI:51240 None 		     
A0A1Y1IA53_KLENI
EnsemblPlants»
0.0
KFL_002150140 AD domain-containing protein Klebsormidium nitens
TI:105231 None 		 
 
Q9U8C2_LEIMA
EnsemblProtists»
0.0
LMJF_35_5290 p21 (p21 antigen protein) Leishmania major
TI:5664 None 		 
 
W5N650_LEPOC
Ensembl»
0.0
LSM12 homolog Lepisosteus oculatus
TI:7918 None
 
F7GZM1_MACMU
Ensembl»
0.0
LSM12 LSM12 homolog (Protein LSM12 homolog) Macaca mulatta
TI:9544 None
 
A0A2C9WMS4_MANES
EnsemblPlants»
0.0
MANES_01G197300 AD domain-containing protein Manihot esculenta
TI:3983 None 		 
 
A0A2R6WQZ7_MARPO
EnsemblPlants»
0.0
MARPO_0065s0085 AD domain-containing protein Marchantia polymorpha
TI:3197 None 		 
 
A0A072U132_MEDTR
EnsemblPlants»
0.0
MTR_8g461280 Anticodon-binding domain protein Medicago truncatula
TI:3880 None 		 
 
G7LFG2_MEDTR
EnsemblPlants»
0.0
11407143 Anticodon-binding domain protein
(Putative Anticodon-binding domain-containing protein)		 Medicago truncatula
TI:3880 None 		 
 
F7CBC3_MONDO
Ensembl»
0.0
LSM12 LSM12 homolog Monodelphis domestica
TI:13616 None
   
LSM12_MOUSE
Ensembl»
0.0
Lsm12 Protein LSM12 Mus musculus
TI:10090 None
 
A0A804I8Y8_MUSAM
EnsemblPlants»
0.0
AD domain-containing protein Musa acuminata
TI:4641 None 		     
A0A804KJC4_MUSAM
EnsemblPlants»
0.0
GSMUA_232300.1 (wild Malaysian banana) hypothetical protein Musa acuminata
TI:4641 None 		 
 
A0A1U8AZ19_NELNU
EnsemblBacteria»
0.0
LOC104607930 Protein LSM12 homolog A Nelumbo nucifera
TI:4432 None 		     
A7RHX7_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g236359 AD domain-containing protein Nematostella vectensis
TI:45351 None 		 
 
A0A1S3XFQ0_TOBAC
EnsemblFungi»
0.0
LOC107764607 Protein LSM12 homolog Nicotiana tabacum
TI:4097 None 		     
A0A1S4C734_TOBAC
EnsemblFungi»
0.0
LOC107815829 Protein LSM12 homolog Nicotiana tabacum
TI:4097 None 		     
A0A6I8NEK0_ORNAN
Ensembl»
0.0
LSM12 LSM12 homolog Ornithorhynchus anatinus
TI:9258 None
   
Q6Z7R6_ORYSJ
EnsemblPlants»
0.0
Os02g0741900 Os02g0741900 protein (cDNA
clone:J013153P08, full insert sequence)		 Oryza sativa
TI:4530 None 		 
 
H2LNS7_ORYLA
Ensembl»
0.0
LOC101168777 Protein LSM12 homolog A Oryzias latipes
TI:8090 None
   
A0A2I3S7Y8_PANTR
Ensembl»
0.0
LSM12 LSM12 homolog Pan troglodytes
TI:9598 None
 
A0BC77_PARTE
EnsemblProtists»
0.0
GSPATT00004238001 Chromosome undetermined scaffold_10,
whole genome shotgun sequence		 Paramecium tetraurelia
TI:5888 None 		 
 
A0C782_PARTE
EnsemblProtists»
0.0
GSPATT00035779001 Chromosome undetermined scaffold_154,
whole genome shotgun sequence		 Paramecium tetraurelia
TI:5888 None 		 
 
A0A2K1KCU0_PHYPA
EnsemblPlants»
0.0
PHYPA_010779 AD domain-containing protein Physcomitrium patens
TI:3218 None 		 
 
A9RZZ6_PHYPA
EnsemblPlants»
0.0
PHYPA_000327 AD domain-containing protein Physcomitrium patens
TI:3218 None 		 
 
H3H3B6_PHYRM
EnsemblProtists»
0.0
AD domain-containing protein Phytophthora ramorum
TI:164328 None 		 
 
C6KSW3_PLAF7
EnsemblProtists»
0.0
PF3D7_0611900 Lsm12, putative Plasmodium falciparum
TI:5833 None 		 
 
A0A2K1YRI0_POPTR
EnsemblPlants»
0.0
POPTR_010G095600 AD domain-containing protein Populus trichocarpa
TI:3694 None 		 
 
B9HJR8_POPTR
EnsemblPlants»
0.0
POPTR_008G146200 AD domain-containing protein Populus trichocarpa
TI:3694 None 		 
 
A0A251R3C6_PRUPE
EnsemblPlants»
0.0
PRUPE_1G258500 AD domain-containing protein Prunus persica
TI:3760 None 		 
 
A0A251R4D1_PRUPE
EnsemblPlants»
0.0
PRUPE_1G258600 AD domain-containing protein Prunus persica
TI:3760 None 		 
 
E3K893_PUCGT
EnsemblFungi»
0.0
PGTG_06667 AD domain-containing protein Puccinia graminis
TI:5297 None 		 
 
A0A8I6GM11_RAT
RGD»
0.0
Lsm12 LSM12 homolog Rattus norvegicus
TI:10116 None
   
B9SZI5_RICCO
EnsemblBacteria»
0.0
RCOM_0394080 AD domain-containing protein Ricinus communis
TI:3988 None 		 
 
LSM12_YEAST
SGD»
1.8
LSM12 Protein LSM12 (Sm-like protein 12) Saccharomyces cerevisiae
TI:4932 None
 
D8REJ8_SELML
EnsemblPlants»
0.0
SELMODRAFT_440813 AD domain-containing protein Selaginella moellendorffii
TI:88036 None 		 
 
D8RI39_SELML
EnsemblPlants»
0.0
SELMODRAFT_270872 AD domain-containing protein Selaginella moellendorffii
TI:88036 None 		 
 
K3YZ15_SETIT
EnsemblPlants»
0.0
AD domain-containing protein Setaria italica
TI:4555 None 		 
 
A0A3Q7G396_SOLLC
EnsemblPlants»
0.0
AD domain-containing protein Solanum lycopersicum
TI:4081 None 		     
A0A3Q7GU14_SOLLC
EnsemblPlants»
0.0
AD domain-containing protein Solanum lycopersicum
TI:4081 None 		     
C5XYW7_SORBI
EnsemblPlants»
0.0
SORBI_3004G242100 AD domain-containing protein Sorghum bicolor
TI:4558 None 		 
 
A0A7M7P598_STRPU
EnsemblMetazoa»
0.0
AD domain-containing protein Strongylocentrotus purpuratus
TI:7668 None 		     
A0A7M7RH98_STRPU
EnsemblMetazoa»
0.0
AD domain-containing protein Strongylocentrotus purpuratus
TI:7668 None 		     
A0A8W4FFA0_PIG
Ensembl»
0.0
LSM12 LSM12 homolog Sus scrofa
TI:9823 None
   
B8CE83_THAPS
EnsemblProtists»
0.0
THAPSDRAFT_25278 AD domain-containing protein Thalassiosira pseudonana
TI:35128 None 		 
 
A0A061E6V2_THECC
EnsemblPlants»
0.0
TCM_010235 RNA-processing Theobroma cacao
TI:3641 None 		 
 
D2A635_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_15064 Protein LSM12 homolog A-like Protein Tribolium castaneum
TI:7070 None
 
B3RQN9_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_63807 AD domain-containing protein Trichoplax adhaerens
TI:10228 None 		 
 
W5GZ13_WHEAT
EnsemblPlants»
0.0
CFC21_093704 AD domain-containing protein Triticum aestivum
TI:4565 None 		 
 
LSM12_TRYB2
VEuPathDB»
0.0
LSM12 PBP1-interacting protein LSM12 Trypanosoma brucei
TI:5691 None
 
D7TNL4_VITVI
EnsemblPlants»
0.0
VIT_01s0026g00750 AD domain-containing protein Vitis vinifera
TI:29760 None 		 
 
A0A1L8ESE6_XENLA
Xenbase»
0.0
lsm12.L Protein LSM12 homolog Xenopus laevis
TI:8355 None
   
F6X492_XENTR
Xenbase»
0.0
lsm12 Protein LSM12 homolog (Protein
LSM12 homolog isoform X1)		 Xenopus tropicalis
TI:8364 None
   
LSM12_XENLA
Xenbase»
0.0
lsm12 Protein LSM12 Xenopus laevis
TI:8355 None
 
LSM12_XENTR
Xenbase»
0.0
lsm12 Protein LSM12 Xenopus tropicalis
TI:8364 None
 
Q6CCA6_YARLI
EnsemblFungi»
0.0
YALI0_C11055g YALI0C11055p Yarrowia lipolytica
TI:4952 None 		 
 
A0A804NXY9_MAIZE
EnsemblPlants»
0.0
100216691 AD domain-containing protein Zea mays
TI:4577 None 		     
B4FKI8_MAIZE
EnsemblPlants»
0.0
100216930 AD domain-containing protein Zea mays
TI:4577 None 		 
 
A0A0K9PT21_ZOSMR
EnsemblPlants»
0.0
ZOSMA_16G00670 LSM12-like protein Zostera marina
TI:29655 None