Collated Gene Ontology terms

Biological process: phosphoglycerate mutase activity(2024) manganese ion binding(2024) calcium ion binding(2024) metal ion binding(2024) mRNA binding(2018) RNA binding(2014)

Molecular function: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2018, 2021, 2024 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2013, 2018, 2024 glucose catabolic process2024 endoplasmic reticulum calcium ion homeostasis2024 ribosome biogenesis2024 ribosomal large subunit biogenesis2018 regulation of ribosome biogenesis2020 rRNA processing2024 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021
digestive tract development2020

Cellular component: nucleolus2004, 2011, 2012, 2013, 2018, 2024 fibrillar center2023, 2024 nucleus2009, 2016, 2017, 2018, 2024 membrane2024 endoplasmic reticulum2024 cytoplasm2024 mitochondrion2021 histone acetyltransferase complex2016 cytosol2009

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 2/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 14/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 3/4 
Harosa: 2/4 
Hacrobia: 0/0 
Plants: 35/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
U5D221_AMBTC
EnsemblPlants»
0.0
AMTR_s00062p00168210 FHA domain-containing protein Amborella trichopoda
TI:13333 None 		 
 
U5DE11_AMBTC
EnsemblPlants»
0.0
AMTR_s00062p00165700 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Amborella trichopoda
TI:13333 None
 
G1KBA1_ANOCA
Ensembl»
0.0
URB1 URB1 ribosome biogenesis homolog Anolis carolinensis
TI:28377 None
   
F4IBR2_ARATH
TAIR»
0.0
IDAP1 Nucleolar pre-ribosomal-associated protein Arabidopsis thaliana
TI:3702 None
 
F4JVU5_ARATH
TAIR»
0.0
EMB2788 Ribosome 60S biogenesis amino-terminal protein Arabidopsis thaliana
TI:3702 None 		 
 
Q75CL4_ASHGO
EnsemblFungi»
0.0
AGOS_ACL095C ACL095Cp Ashbya gossypii
TI:33169 None
 
Q4WV52_ASPFU
EnsemblFungi»
0.0
AFUA_5G10840 Ribosome biogenesis protein Urb1, putative Aspergillus fumigatus
TI:746128 None
 
F4P605_BATDJ
EnsemblBacteria»
0.0
BATDEDRAFT_89917 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Batrachochytrium dendrobatidis
TI:109871 None
 
F1MZA7_BOVIN
Ensembl»
0.0
URB1 URB1 ribosome biosis homolog Bos taurus
TI:9913 None
   
A0A0Q3FPB7_BRADI
EnsemblPlants»
0.0
100836046 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Brachypodium distachyon
TI:15368 None
 
A0A9J7KC45_BRAFL
CTD»
0.0
LOC118408331 Nucleolar pre-ribosomal-associated
protein 1-like		 Branchiostoma floridae
TI:7739 None 		     
A0A9J7LML2_BRAFL
CTD»
0.0
LOC118422310 Nucleolar pre-ribosomal-associated
protein 1-like		 Branchiostoma floridae
TI:7739 None 		     
A0A078GVS9_BRANA
EnsemblPlants»
0.0
BnaC01g19160D BnaC01g19160D protein Brassica napus
TI:3708 None
 
M4EC77_BRACM
EnsemblPlants»
0.0
Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Brassica campestris
TI:3711 None
   
A8XUD3_CAEBR
WormBase»
0.0
CBG18929 CBG_18929 Protein CBG18929 Caenorhabditis briggsae
TI:6238 None 		 
 
O16515_CAEEL
WormBase»
0.0
CELE_T05H4.10 T05H4.10 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Caenorhabditis elegans
TI:6239 None 		 
 
A0A1D8PE47_CANAL
EnsemblFungi»
0.0
CAALFM_C107660WA orf19.8812 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Candida albicans
TI:5476 None
 
A0A8I3PL33_CANLF
Ensembl»
0.0
URB1 URB1 ribosome biogenesis homolog Canis lupus
TI:9612 None
   
A0A2G3A5P5_CAPAN
EnsemblPlants»
0.0
T459_04682 Nucleolar pre-ribosomal-associated protein 1 Capsicum annuum
TI:4072 None
 
A0A2K3E009_CHLRE
EnsemblPlants»
0.0
CHLRE_02g074300v5 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Chlamydomonas reinhardtii
TI:3055 None
 
F6UVF9_CIOIN
Ensembl»
0.0
Telomere-length maintenance and DNA
damage repair domain-containing protein		 Ciona intestinalis
TI:7719 None 		 
 
F6UVM5_CIOIN
Ensembl»
0.0
Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Ciona intestinalis
TI:7719 None 		 
 
A0A067F5H5_CITSI
Ensembl»
0.0
CISIN_1g0000571mg Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Citrus sinensis
TI:2711 None
 
A0A067FGR3_CITSI
Ensembl»
0.0
CISIN_1g042912mg Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Citrus sinensis
TI:2711 None 		 
 
Q5KJ67_CRYNJ
EnsemblFungi»
0.0
CND00460 Nucleolus protein, putative Cryptococcus neoformans
TI:5207 None
 
A0A0A0K4N8_CUCSA
EnsemblPlants»
0.0
Csa_7G368170 Uncharacterized protein Cucumis sativus
TI:3659 None 		 
 
A0A0A0K5A8_CUCSA
EnsemblPlants»
0.0
Csa_7G368200 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Cucumis sativus
TI:3659 None
 
A0A0R4ILM9_DANRE
ZFIN»
2.6
mp:zf637-1-000544 Nucleolar pre-ribosomal-associated protein 1
(URB1 ribosome biogenesis homolog)		 Danio rerio
TI:7955 None
 
F0Z7E0_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_25595 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Dictyostelium purpureum
TI:5786 None
 
Q54RN6_DICDI
dictyBase»
1.0
DDB_G0283013 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Dictyostelium discoideum
TI:44689 None
 
Q9VD07_DROME
FlyBase»
1.0
Dmel\CG12499 Nucleolar pre-ribosomal-associated protein 1 Drosophila melanogaster
TI:7227 None
 
Q5BGU3_EMENI
EnsemblFungi»
0.0
ANIA_00237 Ribosome biogenesis protein
Urb1, putative (AFU_orthologue AFUA_5G10840)		 Emericella nidulans
TI:162425 None
 
C4LZ34_ENTH1
EnsemblProtists»
0.0
EHI_009600 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Entamoeba histolytica
TI:5759 None
 
F7AG19_HORSE
Ensembl»
0.0
URB1 URB1 ribosome biosis homolog Equus caballus
TI:9796 None
   
A0A022Q6L6_ERYGU
EnsemblFungi»
0.0
MIMGU_mgv1a025361mg Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Erythranthe guttata
TI:4155 None
 
A0A022RGU4_ERYGU
EnsemblFungi»
0.0
MIMGU_mgv1a0000301mg Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Erythranthe guttata
TI:4155 None
 
A0A022RHF8_ERYGU
EnsemblFungi»
0.0
MIMGU_mgv1a0000302mg Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Erythranthe guttata
TI:4155 None
 
M3VY15_FELCA
Ensembl»
0.0
URB1 URB1 ribosome biosis homolog Felis catus
TI:9685 None
 
A0A8V0Y8Q5_CHICK
Ensembl»
0.0
URB1 URB1 ribosome biogenesis homolog Gallus gallus
TI:9031 None
   
A0A0R0EYH1_SOYBN
EnsemblPlants»
0.0
GLYMA_18G096800 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Glycine max
TI:3847 None
 
A0A0R0KY50_SOYBN
EnsemblPlants»
0.0
GLYMA_02G172300 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Glycine max
TI:3847 None 		 
 
I1KY77_SOYBN
EnsemblPlants»
0.0
100796806 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Glycine max
TI:3847 None
 
G3QDG5_GORGO
Ensembl»
0.0
URB1 URB1 ribosome biogenesis homolog Gorilla gorilla
TI:9593 None
 
A0A1U8J532_GOSHI
Ensembl»
0.0
LOC107903796 Uncharacterized protein LOC107903796 isoform X1 Gossypium hirsutum
TI:3635 None
   
A0A1U8PCY8_GOSHI
Ensembl»
0.0
LOC107957221 Uncharacterized protein LOC107957221 isoform X1 Gossypium hirsutum
TI:3635 None
   
A0A9K3H9Z9_HELAN
EnsemblPlants»
0.0
HanXRQr2_Chr14g0662161 Nucleolar pre-ribosomal-associated protein Helianthus annuus
TI:4232 None 		 
 
T1FTF7_HELRO
EnsemblMetazoa»
0.0
20212104 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Helobdella robusta
TI:6412 None
 
NPA1P_HUMAN
Ensembl»
1.5
URB1 Nucleolar pre-ribosomal-associated protein 1 (Nucleolar protein
254 kDa) (URB1 ribosome biogenesis 1 homolog)		 Homo sapiens
TI:9606 None
 
A0A2I4DVG8_JUGRE
EnsemblPlants»
0.0
LOC108983821 Uncharacterized protein LOC108983821 isoform X1 Juglans regia
TI:51240 None
 
A0A1Y1IHT2_KLENI
EnsemblPlants»
0.0
KFL_004830100 HEAT repeat-containing protein 1 Klebsormidium nitens
TI:105231 None
 
Q4QAS3_LEIMA
EnsemblProtists»
0.0
LMJF_24_0600 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Leishmania major
TI:5664 None
 
W5MS56_LEPOC
Ensembl»
0.0
URB1 ribosome biogenesis homolog Lepisosteus oculatus
TI:7918 None
 
F6T9B6_MACMU
Ensembl»
0.0
URB1 URB1 ribosome biosis homolog Macaca mulatta
TI:9544 None
   
A0A2C9UEF4_MANES
EnsemblPlants»
0.0
MANES_15G088800 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Manihot esculenta
TI:3983 None
 
A0A2R6XGQ3_MARPO
EnsemblPlants»
0.0
MARPO_0015s0081 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Marchantia polymorpha
TI:3197 None
 
A0A072UXP5_MEDTR
EnsemblPlants»
0.0
25488951 Putative nucleolar pre-ribosomal-associated protein
(Ribosome 60S biogenesis amino-terminal protein)		 Medicago truncatula
TI:3880 None
 
A0A5F8HB72_MONDO
Ensembl»
0.0
URB1 URB1 ribosome biogenesis homolog Monodelphis domestica
TI:13616 None
   
A9UU18_MONBE
EnsemblProtists»
0.0
MONBRDRAFT_23642 Non-specific serine/threonine protein kinase Monosiga brevicollis
TI:81824 None
 
NPA1P_MOUSE
AG»
0.0
Urb1 Nucleolar pre-ribosomal-associated protein 1
(URB1 ribosome biogenesis 1 homolog)		 Mus musculus
TI:10090 None
 
A0A804IFS3_MUSAM
EnsemblPlants»
0.0
GSMUA_194150.1 (wild Malaysian banana) hypothetical protein Musa acuminata
TI:4641 None 		 
 
A0A1U8AXU1_NELNU
EnsemblBacteria»
0.0
LOC104604974 Uncharacterized protein LOC104604974 Nelumbo nucifera
TI:4432 None
   
A0A1U8BFA6_NELNU
EnsemblBacteria»
0.0
LOC104612823 Uncharacterized protein LOC104612823 Nelumbo nucifera
TI:4432 None 		     
A7T814_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g223605 Uncharacterized protein Nematostella vectensis
TI:45351 None 		 
 
V5IMD8_NEUCR
EnsemblFungi»
0.0
NCU16779 Ribosome biogenesis protein Urb1 Neurospora crassa
TI:5141 None
 
A0A1S3ZJI4_TOBAC
EnsemblFungi»
0.0
LOC107787503 Uncharacterized protein LOC107787503 Nicotiana tabacum
TI:4097 None 		     
A0A1S3ZWU6_TOBAC
EnsemblFungi»
0.0
LOC107791300 Uncharacterized protein LOC107791300 Nicotiana tabacum
TI:4097 None 		     
A0A1S4BKC1_TOBAC
EnsemblFungi»
0.0
LOC107809215 Uncharacterized protein LOC107809215 Nicotiana tabacum
TI:4097 None
   
A0A1S4D0H4_TOBAC
EnsemblFungi»
0.0
LOC107824626 Uncharacterized protein LOC107824626 Nicotiana tabacum
TI:4097 None
   
A0A6I8NTW3_ORNAN
Ensembl»
0.0
URB1 URB1 ribosome biogenesis homolog Ornithorhynchus anatinus
TI:9258 None
   
A0A0P0WF96_ORYSJ
EnsemblPlants»
0.0
Os04g0625350 Os04g0625350 protein Oryza sativa
TI:4530 None 		 
 
Q0J9Y4_ORYSJ
EnsemblPlants»
0.0
Os04g0625300 Os04g0625300 protein Oryza sativa
TI:4530 None 		 
 
H2LE93_ORYLA
Ensembl»
0.0
urb1 URB1 ribosome biogenesis homolog Oryzias latipes
TI:8090 None
   
H2QKY5_PANTR
Ensembl»
0.0
URB1 URB1 ribosome biosis homolog Pan troglodytes
TI:9598 None
 
A0A2K1L3L9_PHYPA
EnsemblPlants»
0.0
PHYPA_003418 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Physcomitrium patens
TI:3218 None
 
H3GR19_PHYRM
EnsemblProtists»
0.0
HEAT repeat-containing protein 1 Phytophthora ramorum
TI:164328 None
 
A0A2K2CCE2_POPTR
EnsemblPlants»
0.0
POPTR_001G423600 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Populus trichocarpa
TI:3694 None
 
A0A2A6C1T2_PRIPA
EnsemblMetazoa»
0.0
WBGene00280486 NopRA1 domain-containing protein Pristionchus pacificus
TI:54126 None 		 
 
A0A251PNW1_PRUPE
EnsemblPlants»
0.0
PRUPE_4G211600 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Prunus persica
TI:3760 None
 
E3KI70_PUCGT
EnsemblFungi»
0.0
PGTG_09708 Uncharacterized protein Puccinia graminis
TI:5297 None
 
D4A7S4_RAT
RGD»
1.0
Urb1 URB1 ribosome biogenesis homolog Rattus norvegicus
TI:10116 None
   
B9T4B4_RICCO
EnsemblBacteria»
0.0
RCOM_0201120 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Ricinus communis
TI:3988 None
 
URB1_YEAST
SGD»
3.7
URB1 Nucleolar pre-ribosomal-associated protein 1
(Unhealthy ribosome biogenesis protein 1)		 Saccharomyces cerevisiae
TI:4932 None
 
B6K6F8_SCHJY
EnsemblFungi»
0.0
SJAG_04289 Ribosome biogenesis protein Urb1 Schizosaccharomyces japonicus
TI:4897 None
 
YJL2_SCHPO
PomBase»
1.0
SPCC14G10.02 SPCC18B5.13 Uncharacterized protein C14G10.02 Schizosaccharomyces pombe
TI:4896 None
 
A7ESE0_SCLS1
EnsemblFungi»
0.0
SS1G_08245 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Sclerotinia sclerotiorum
TI:5180 None
 
D8RQM4_SELML
EnsemblPlants»
0.0
SELMODRAFT_442019 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Selaginella moellendorffii
TI:88036 None
 
D8S076_SELML
EnsemblPlants»
0.0
SELMODRAFT_443287 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Selaginella moellendorffii
TI:88036 None
 
K3ZMR4_SETIT
EnsemblPlants»
0.0
Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Setaria italica
TI:4555 None
 
K3ZPV8_SETIT
EnsemblPlants»
0.0
Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Setaria italica
TI:4555 None
 
A0A3Q7FKT9_SOLLC
EnsemblPlants»
0.0
Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Solanum lycopersicum
TI:4081 None
   
C5YG68_SORBI
EnsemblPlants»
0.0
SORBI_3006G221600 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Sorghum bicolor
TI:4558 None
 
A0A7M7PEX1_STRPU
EnsemblMetazoa»
0.0
Nucleolar pre-ribosomal-associated protein 1 Strongylocentrotus purpuratus
TI:7668 None
   
A0A286ZYB9_PIG
Ensembl»
0.0
URB1 URB1 ribosome biosis homolog Sus scrofa
TI:9823 None
   
B8CA39_THAPS
EnsemblProtists»
0.0
THAPSDRAFT_24445 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Thalassiosira pseudonana
TI:35128 None
 
A0A061F9D6_THECC
EnsemblPlants»
0.0
TCM_032898 Uncharacterized protein Theobroma cacao
TI:3641 None 		 
 
A0A061F9F9_THECC
EnsemblPlants»
0.0
TCM_032982 Uncharacterized protein isoform 1 Theobroma cacao
TI:3641 None
 
A0A139WJU6_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_32939 Uncharacterized protein Tribolium castaneum
TI:7070 None
 
A2DCJ6_TRIV3
VEuPathDB»
0.0
TVAG_249930 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Trichomonas vaginalis
TI:5722 None
 
B3RSW1_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_54749 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Trichoplax adhaerens
TI:10228 None
 
A0A3B6B4N9_WHEAT
EnsemblPlants»
0.0
CFC21_018773 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Triticum aestivum
TI:4565 None
 
A0A3B6C115_WHEAT
EnsemblPlants»
0.0
Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Triticum aestivum
TI:4565 None
   
A0A3B6D7T5_WHEAT
EnsemblPlants»
0.0
CFC21_028303 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Triticum aestivum
TI:4565 None
 
A0A3B6DI36_WHEAT
EnsemblPlants»
0.0
CFC21_031490 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Triticum aestivum
TI:4565 None
 
Q385P3_TRYB2
VEuPathDB»
0.0
Tb11.02.2920 Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Trypanosoma brucei
TI:5691 None
 
F6HEJ2_VITVI
EnsemblPlants»
0.0
VIT_19s0090g00270 Nucleolar pre-ribosomal-associated protein
1 N-terminal domain-containing protein		 Vitis vinifera
TI:29760 None
 
A0A8J1M733_XENLA
CTD»
0.0
urb1.L Nucleolar pre-ribosomal-associated protein 1 Xenopus laevis
TI:8355 None
   
B5DE80_XENTR
Xenbase»
0.0
urb1 Nucleolar pre-ribosomal-associated protein 1 Xenopus tropicalis
TI:8364 None 		 
 
Q6CFH7_YARLI
EnsemblFungi»
0.0
YALI0_B06875g YALI0B06875p Yarrowia lipolytica
TI:4952 None
 
A0A1D6DYM7_MAIZE
EnsemblPlants»
0.0
ZEAMMB73_Zm00001d002250 Putative cinnamyl alcohol dehydrogenase 1 Zea mays
TI:4577 None 		 
 
A0A804LDW9_MAIZE
EnsemblPlants»
0.0
Nucleolar pre-ribosomal-associated protein
1 C-terminal domain-containing protein		 Zea mays
TI:4577 None 		     
A0A804PMF6_MAIZE
EnsemblPlants»
0.0
Uncharacterized protein Zea mays
TI:4577 None
   
A0A804UAV0_MAIZE
EnsemblPlants»
0.0
Uncharacterized protein Zea mays
TI:4577 None
   
A0A0K9Q5S3_ZOSMR
EnsemblPlants»
0.0
ZOSMA_109G00170 Nucleolar pre-ribosomal-associated protein 1 Zostera marina
TI:29655 None