Collated Gene Ontology terms

Biological process: zinc ion binding(2025) metal ion binding(2025) DNA binding(2025) SMAD binding(2012, 2025) R-SMAD binding(2012, 2025) calcium ion binding(2025) RNA binding(2025) nuclease activity(2025) hydrolase activity(2025)

Molecular function: mRNA transport2025 positive regulation of activin receptor signaling pathway2012 nuclear mRNA surveillance of meiosis-specific transcripts2014, 2025 mRNA 3'-end processing2012 regulation of mRNA export from nucleus2009 regulation of RNA splicing2016 nuclear mRNA surveillance of spliceosomal pre-mRNA splicing2024 nuclear export2009 negative regulation of post-transcriptional gene silencing2016 mRNA processing2025
RNA catabolic process2025

Cellular component: nucleus2009, 2012, 2013, 2018, 2024, 2025 mRNA cleavage and polyadenylation specificity factor complex2012, 2025 nuclear body2014, 2025 chromatin2014, 2025 MTREC complex2014, 2025 nucleoplasm2025 nuclear speck2016

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 0/3 
Arthropods: 4/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 12/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 37/39 
Archea: 0/8 
Bacteria: 1/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
U5CL63_AMBTC
euHCVdb»
0.0
AMTR_s03425p00004820 C3H1-type domain-containing protein Amborella trichopoda
TI:13333 None
 
W1NML5_AMBTC
euHCVdb»
0.0
AMTR_s00202p00038800 C3H1-type domain-containing protein Amborella trichopoda
TI:13333 None
 
A0A803TJB0_ANOCA
Ensembl»
0.0
zc3h3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Anolis carolinensis
TI:28377 None
   
A7UTV2_ANOGA
EnsemblMetazoa»
0.0
5667270 AGAP005735-PA Anopheles gambiae
TI:7165 None
 
C3H7_ARATH
TAIR»
0.0
At1g21570 Zinc finger CCCH domain-containing protein
7 (AtC3H7) (EC 3.1.-.-) (AtSmicl)		 Arabidopsis thaliana
TI:3702 None
 
Y1158_ARATH
TAIR»
1.6
At1g21580 Uncharacterized protein At1g21580 Arabidopsis thaliana
TI:3702 None
   
Q4WC72_ASPFU
TubercuList»
0.0
AFUA_8G05480 CCCH zinc finger protein Aspergillus fumigatus
TI:746128 None
 
F4NRW6_BATDJ
neXtProt»
0.0
BATDEDRAFT_84497 C3H1-type domain-containing protein Batrachochytrium dendrobatidis
TI:109871 None
 
F1MXR8_BOVIN
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Bos taurus
TI:9913 None
   
A0A0Q3FK42_BRADI
EnsemblPlants»
0.0
BRADI_3g44276v3 C3H1-type domain-containing protein Brachypodium distachyon
TI:15368 None
 
I1GVC3_BRADI
EnsemblPlants»
0.0
LOC100829964 C3H1-type domain-containing protein Brachypodium distachyon
TI:15368 None
 
A0A9J7MT10_BRAFL
euHCVdb»
0.0
LOC118417370 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Branchiostoma floridae
TI:7739 None
   
A0A078F4A5_BRANA
euHCVdb»
0.0
BnaA06g15300D BnaA06g15300D protein Brassica napus
TI:3708 None
 
A0A078HMG9_BRANA
euHCVdb»
0.0
BnaC08g19850D BnaC08g19850D protein Brassica napus
TI:3708 None
 
M4DIT9_BRACM
EnsemblPlants»
0.0
C3H1-type domain-containing protein Brassica campestris
TI:3711 None
   
M4DN42_BRACM
EnsemblPlants»
0.0
Uncharacterized protein Brassica campestris
TI:3711 None
   
A0A1D8PSG9_CANAL
CGD»
0.0
CAALFM_CR03310CA orf19.9929 C3H1-type domain-containing protein Candida albicans
TI:5476 None
 
A0A8I3NW18_CANLF
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Canis lupus
TI:9612 None
   
A0A2K3DVZ0_CHLRE
euHCVdb»
0.0
CHLRE_03g154900v5 C3H1-type domain-containing protein Chlamydomonas reinhardtii
TI:3055 None
 
H2XKA7_CIOIN
Ensembl»
0.0
C3H1-type domain-containing protein Ciona intestinalis
TI:7719 None
 
A0A067GYA9_CITSI
euHCVdb»
0.0
CISIN_1g039602mg C3H1-type domain-containing protein Citrus sinensis
TI:2711 None
 
Q5KBT7_CRYD1
TubercuList»
0.0
CNI01450 C3H1-type domain-containing protein Cryptococcus deneoformans
TI:40410 None
 
A0A0A0K7A7_CUCSA
euHCVdb»
0.0
Csa_7G221340 C3H1-type domain-containing protein Cucumis sativus
TI:3659 None
 
A0A0A0K8T4_CUCSA
euHCVdb»
0.0
Csa_7G221330 Uncharacterized protein Cucumis sativus
TI:3659 None 		 
   
E7FH07_DANRE
ZFIN»
0.0
zc3h3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Danio rerio
TI:7955 None
 
F0ZNC3_DICPU
TubercuList»
0.0
DICPUDRAFT_79693 C3H1-type domain-containing protein Dictyostelium purpureum
TI:5786 None
 
Q54X64_DICDI
dictyBase»
0.0
DDB_G0279181 C3H1-type domain-containing protein Dictyostelium discoideum
TI:44689 None
 
ZC3H3_DROME
FlyBase»
1.6
ZC3H3 Zinc finger CCCH
domain-containing protein 3 (dZC3H3)		 Drosophila melanogaster
TI:7227 None
 
C8VMX4_EMENI
TubercuList»
0.0
ANIA_01537 CCCH zinc finger
protein (AFU_orthologue AFUA_8G05480)		 Emericella nidulans
TI:162425 None
 
A0A9L0S5W1_HORSE
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Equus caballus
TI:9796 None
   
A0A022QUZ1_ERYGU
euHCVdb»
0.0
MIMGU_mgv1a0001072mg C3H1-type domain-containing protein Erythranthe guttata
TI:4155 None
 
A0ABI7VUB3_FELCA
Ensembl»
0.0
ZC3H3 C3H1-type domain-containing protein Felis catus
TI:9685 None
   
A0A8V0Y2C5_CHICK
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Gallus gallus
TI:9031 None
   
K7LY40_SOYBN
EnsemblPlants»
0.0
LOC100788859 C3H1-type domain-containing protein Glycine max
TI:3847 None
 
K7M716_SOYBN
EnsemblPlants»
0.0
LOC100802468 C3H1-type domain-containing protein Glycine max
TI:3847 None
 
G3QK26_GORGO
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Gorilla gorilla
TI:9593 None
 
A0A1U8N5D9_GOSHI
euHCVdb»
0.0
LOC107943758 Uncharacterized protein At1g21580 Gossypium hirsutum
TI:3635 None
   
A0ABM3BSM8_GOSHI
euHCVdb»
0.0
LOC107960389 Uncharacterized protein At1g21580 isoform X1 Gossypium hirsutum
TI:3635 None
   
A0A251TW12_HELAN
neXtProt»
0.0
HannXRQ_Chr09g0256631 HanXRQr2_Chr09g0388241 Putative zinc finger, CCCH-type
(Transcription factor C3H family)		 Helianthus annuus
TI:4232 None
 
A0A9K3IW28_HELAN
euHCVdb»
0.0
HanXRQr2_Chr06g0276791 Uncharacterized protein Helianthus annuus
TI:4232 None 		 
   
T1G725_HELRO
EnsemblMetazoa»
0.0
20216872 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Helobdella robusta
TI:6412 None
 
ZC3H3_HUMAN
Ensembl»
0.6
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Homo sapiens
TI:9606 None
 
A0A8I6Z8X7_HORVV
EnsemblPlants»
0.0
C3H1-type domain-containing protein Hordeum vulgare
TI:4513 None
   
B7QCC1_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW022116 Zinc finger CCCH domain-containing protein 3 Ixodes scapularis
TI:6945 None
 
A0A2I4G5B7_JUGRE
euHCVdb»
0.0
LOC109004825 Uncharacterized protein LOC109004825 isoform X1 Juglans regia
TI:51240 None
   
A0A1Y1ID47_KLENI
euHCVdb»
0.0
KFL_002650040 C3H1-type domain-containing protein Klebsormidium nitens
TI:105231 None
 
A0A9R1XFA2_LACSA
neXtProt»
0.0
LSAT_V11C400209580 C3H1-type domain-containing protein Lactuca sativa
TI:4236 None
 
W5MQ19_LEPOC
Ensembl»
0.0
Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Lepisosteus oculatus
TI:7918 None
 
A0A5F8AJL6_MACMU
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing protein 3 Macaca mulatta
TI:9544 None
   
A0A2R6WFH2_MARPO
euHCVdb»
0.0
MARPO_0097s0070 C3H1-type domain-containing protein Marchantia polymorpha
TI:3197 None
 
A0A072VFY2_MEDTR
EnsemblPlants»
0.0
25482449 Zinc finger CCCH domain protein, putative Medicago truncatula
TI:3880 None
 
F6SP47_MONDO
Ensembl»
0.0
Zinc finger CCCH-type containing 3 Monodelphis domestica
TI:13616 None
     
ZC3H3_MOUSE
Ensembl»
3.2
Zc3h3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Mus musculus
TI:10090 None
 
A0A804IBD8_MUSAM
EnsemblPlants»
0.0
C3H1-type domain-containing protein Musa acuminata
TI:4641 None
   
A0A1U8Q7X6_NELNU
euHCVdb»
0.0
LOC104606679 Uncharacterized protein At1g21580 Nelumbo nucifera
TI:4432 None
   
A7SQV2_NEMVE
euHCVdb»
0.0
NEMVEDRAFT_v1g128042 C3H1-type domain-containing protein Nematostella vectensis
TI:45351 None
 
V5IRR6_NEUCR
TubercuList»
0.0
NCU03048 CCCH zinc finger protein Neurospora crassa
TI:5141 None
 
A0A1S4BJM2_TOBAC
euHCVdb»
0.0
LOC107809023 LOW QUALITY PROTEIN:
uncharacterized protein LOC107809023		 Nicotiana tabacum
TI:4097 None
   
F7FCN5_ORNAN
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Ornithorhynchus anatinus
TI:9258 None
   
A0A0P0WZ32_ORYSJ
neXtProt»
0.0
Os06g0638000 Os06g0638000 protein Oryza sativa
TI:4530 None
 
A0A3B3HQG2_ORYLA
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Oryzias latipes
TI:8090 None
   
H2QWU2_PANTR
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Pan troglodytes
TI:9598 None
 
A0A7U2I3W7_PHANO
TubercuList»
0.0
JI435_044880 C3H1-type domain-containing protein Phaeosphaeria nodorum
TI:13684 None
 
A0A7I4D9M8_PHYPA
EnsemblPlants»
0.0
LOC112292602 C3H1-type domain-containing protein Physcomitrium patens
TI:3218 None
 
A0A2K2BF49_POPTR
neXtProt»
0.0
POPTR_002G077700 C3H1-type domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A3N7F5X4_POPTR
euHCVdb»
0.0
POPTR_005G182900 C3H1-type domain-containing protein Populus trichocarpa
TI:3694 None
 
A0A251RHD8_PRUPE
neXtProt»
0.0
PRUPE_1G489000 C3H1-type domain-containing protein Prunus persica
TI:3760 None
 
H6QRM5_PUCGT
TubercuList»
0.0
PGTG_21624 C3H1-type domain-containing protein Puccinia graminis
TI:5297 None
 
A0A8I6GIY9_RAT
RGD»
2.0
Zc3h3 Zinc finger CCCH type containing 3 Rattus norvegicus
TI:10116 None
   
B9S2T4_RICCO
euHCVdb»
0.0
RCOM_0561570 C3H1-type domain-containing protein Ricinus communis
TI:3988 None
 
B6JVP1_SCHJY
TubercuList»
0.0
red5 C3H1-type domain-containing protein Schizosaccharomyces japonicus
TI:4897 None
 
YBJC_SCHPO
PomBase»
1.6
SPBC337.12 Zinc finger CCCH
domain-containing protein C337.12		 Schizosaccharomyces pombe
TI:4896 None
 
A7E7Y7_SCLS1
TubercuList»
0.0
SS1G_01415 C3H1-type domain-containing protein Sclerotinia sclerotiorum
TI:5180 None
 
D8QQT2_SELML
euHCVdb»
0.0
SELMODRAFT_70673 C3H1-type domain-containing protein Selaginella moellendorffii
TI:88036 None
 
D8R847_SELML
neXtProt»
0.0
SELMODRAFT_64170 C3H1-type domain-containing protein Selaginella moellendorffii
TI:88036 None
 
K3XUT8_SETIT
EnsemblPlants»
0.0
Uncharacterized protein Setaria italica
TI:4555 None
   
K3Y2H5_SETIT
EnsemblPlants»
0.0
C3H1-type domain-containing protein Setaria italica
TI:4555 None
 
K3Y3W7_SETIT
EnsemblPlants»
0.0
C3H1-type domain-containing protein Setaria italica
TI:4555 None
 
A0A3Q7GY41_SOLLC
EnsemblPlants»
0.0
C3H1-type domain-containing protein Solanum lycopersicum
TI:4081 None
   
M1CDG5_SOLTU
EnsemblPlants»
0.0
Zinc finger (CCCH-type) protein Solanum tuberosum
TI:4113 None 		       
M1CDG6_SOLTU
EnsemblPlants»
0.0
Zinc finger (CCCH-type) protein Solanum tuberosum
TI:4113 None
   
A0A1W0VU13_SORBI
neXtProt»
0.0
SORBI_3010G201500 C3H1-type domain-containing protein Sorghum bicolor
TI:4558 None
 
A0A9R0I368_SPIOL
neXtProt»
0.0
LOC110782009 C3H1-type domain-containing protein Spinacia oleracea
TI:3562 None
   
A0A7M7N490_STRPU
EnsemblMetazoa»
0.0
Zinc finger CCCH domain-containing protein 3 Strongylocentrotus purpuratus
TI:7668 None
   
F1SEV6_PIG
Ensembl»
0.0
ZC3H3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Sus scrofa
TI:9823 None
   
A0A061FH95_THECC
euHCVdb»
0.0
TCM_035217 Zinc finger C-x8-C-x5-C-x3-H type
family protein, putative isoform 1		 Theobroma cacao
TI:3641 None
 
D6WI32_TRICA
euHCVdb»
0.0
AUGUSTUS-3.0.2_02458 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Tribolium castaneum
TI:7070 None
 
B3RJ05_TRIAD
CTD»
0.0
TRIADDRAFT_52522 Zinc finger CCCH domain-containing protein 3 Trichoplax adhaerens
TI:10228 None
 
A0A3B6RSB6_WHEAT
EnsemblPlants»
0.0
C3H1-type domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B6SPE9_WHEAT
EnsemblPlants»
0.0
C3H1-type domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B6TSS9_WHEAT
EnsemblPlants»
0.0
LOC123168683 C3H1-type domain-containing protein Triticum aestivum
TI:4565 None
   
F6H0H6_VITVI
neXtProt»
0.0
VIT_18s0001g01670 C3H1-type domain-containing protein Vitis vinifera
TI:29760 None
 
Q8P3B3_XANCP
EnsemblBacteria»
0.0
XCC4163 ATP-binding protein Xanthomonas campestris
TI:339 None 		 
 
A0A1L8G085_XENLA
Xenbase»
0.0
zc3h3.L Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Xenopus laevis
TI:8355 None
   
A0A803KCY1_XENTR
Xenbase»
0.0
zc3h3 Zinc finger CCCH domain-containing
protein 3 (Smad-interacting CPSF-like factor)		 Xenopus tropicalis
TI:8364 None
   
Q6C1P5_YARLI
TubercuList»
0.0
YALI0_F14531g YALI0F14531p Yarrowia lipolytica
TI:4952 None
 
A0A804R451_MAIZE
EnsemblPlants»
0.0
LOC103638749 C3H1-type domain-containing protein Zea mays
TI:4577 None
   
A0A0K9NJ85_ZOSMR
euHCVdb»
0.0
ZOSMA_92G00340 C3H1-type domain-containing protein Zostera marina
TI:29655 None