Collated Gene Ontology terms

Biological process: mRNA binding(2020, 2021, 2023) second spliceosomal transesterification activity(2009, 2023) RNA binding(2014, 2015) transferase activity(2023) structural constituent of ribosome(2023) histone acetyltransferase activity(2023) acyltransferase activity(2023)

Molecular function: mRNA splicing, via spliceosome2006, 2010, 2011, 2016, 2019, 2021, 2023 embryonic brain development2021, 2023 generation of catalytic spliceosome for second transesterification step2009, 2016, 2023 mRNA branch site recognition2006, 2023 mRNA 3'-splice site recognition2006, 2023 mRNA processing2023 RNA splicing2023 cell division2023 RNA splicing, via transesterification reactions2007, 2009 ribosomal large subunit biogenesis2021
mitochondrial translation2023 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 mRNA cis splicing, via spliceosome2005 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 chromatin remodeling2023

Cellular component: catalytic step 2 spliceosome2010, 2011, 2021, 2023 spliceosomal complex2006, 2007, 2023 nuclear speck2019, 2023 nucleoplasm2013, 2018, 2023 U2-type catalytic step 2 spliceosome2018, 2019, 2023 Prp19 complex2013, 2016, 2023 post-mRNA release spliceosomal complex2016, 2023 nucleus2009, 2017, 2023 nuclear periphery2016, 2023 ribosome2023
ribonucleoprotein complex2023 precatalytic spliceosome2010 nucleolus2018 mitochondrion2023 mitochondrial large ribosomal subunit2023 membrane2023 extracellular region2019

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 16/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 2/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 36/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 0 2 4 6 8 10 Knownness

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
A4FVN8_ARATH
TAIR»
0.8
At1g10580 At1g10580 (Transducin/WD40
repeat-like superfamily protein)		 Arabidopsis thaliana
TI:3702 None
 
A5A8P6_CAEEL
WormBase»
0.0
CELE_Y54G2A.12 Y54G2A.12 WD_REPEATS_REGION domain-containing protein Caenorhabditis elegans
TI:6239 None
 
B2RYC1_RAT
RGD»
2.0
Cdc40 Cdc40 protein (Cell division cycle 40) Rattus norvegicus
TI:10116 None
 
F1NQ45_CHICK
Ensembl»
1.0
CDC40 Cell division cycle 40 Gallus gallus
TI:9031 None
   
O44729_CAEEL
WormBase»
1.0
prp-17 WD_REPEATS_REGION domain-containing protein Caenorhabditis elegans
TI:6239 None
 
PRP17_HUMAN
Ensembl»
4.9
CDC40 Pre-mRNA-processing factor 17 (Cell division cycle 40
homolog) (EH-binding protein 3) (Ehb3) (PRP17 homolog) (hPRP17)		 Homo sapiens
TI:9606 None
 
PRP17_MOUSE
Ensembl»
3.0
Cdc40 Pre-mRNA-processing factor 17 (Cell division
cycle 40 homolog) (PRP17 homolog)		 Mus musculus
TI:10090 None
 
PRP17_SCHPO
PomBase»
1.5
prp17 Pre-mRNA-processing factor 17 Schizosaccharomyces pombe
TI:4896 None
 
PRP17_YEAST
SGD»
5.0
CDC40 Pre-mRNA-processing factor 17 (Cell
division control protein 40)		 Saccharomyces cerevisiae
TI:4932 None
 
Q54HF5_DICDI
dictyBase»
2.0
cdc40 WD40 repeat-containing protein Dictyostelium discoideum
TI:44689 None
 
Q5I0F8_DANRE
ZFIN»
1.0
zgc:86860 Cell division cycle 40 homolog
(S. cerevisiae) (Pre-mRNA-processing factor 17)		 Danio rerio
TI:7955 None
 
Q9VD52_DROME
FlyBase»
3.0
CDC40 LD21931p Drosophila melanogaster
TI:7227 None