Collated Gene Ontology terms

Biological process: ATP binding(2014, 2024) helicase activity(2006, 2007, 2021, 2024) hydrolase activity(2024) nucleic acid binding(2024) ATP hydrolysis activity(2009, 2023, 2024) RNA helicase activity(2006, 2007, 2013, 2017, 2019, 2022, 2023, 2024) 3'-5' DNA helicase activity(2012, 2017, 2019, 2024) DNA binding(2024) single-stranded 3'-5' DNA helicase activity(2020, 2022, 2024) identical protein binding(2024)
DNA-directed DNA polymerase activity2024 isomerase activity2024 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides2024 S-adenosylmethionine-dependent methyltransferase activity2024 catalytic activity, acting on DNA2024 RNA binding2014, 2024 single-stranded DNA helicase activity2010, 2012, 2024 DNA helicase activity2024 ATPase binding2012, 2024 mRNA binding2018, 2021 endonuclease activity2024 polyubiquitin modification-dependent protein binding2024 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2024

Molecular function: mRNA processing2016, 2024 RNA catabolic process2023 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)2013, 2022, 2023, 2024 DNA duplex unwinding2012, 2022, 2024 rescue of stalled ribosome2021, 2023, 2024 ribosome-associated ubiquitin-dependent protein catabolic process2021, 2022, 2024 ribosome disassembly2021, 2022, 2023, 2024 mRNA splicing, via spliceosome2006, 2010, 2011, 2013, 2016, 2019, 2020, 2022, 2024 DNA repair2024 DNA dealkylation involved in DNA repair2012, 2022, 2024
double-strand break repair via synthesis-dependent strand annealing2022, 2024 double-strand break repair via alternative nonhomologous end joining2022, 2024 DNA double-strand break processing involved in repair via single-strand annealing2022, 2024 double-strand break repair via homologous recombination2013, 2024 positive regulation of double-strand break repair via homologous recombination2022, 2024 RNA splicing2006, 2024 DNA biosynthetic process2024 DNA-templated DNA replication2024 nervous system development2024 DNA conformation change2024 regulation of translation2006, 2013, 2024 cytoplasmic translation2013, 2017, 2024 resolution of meiotic recombination intermediates2012, 2024 regulation of alternative mRNA splicing, via spliceosome2006, 2009, 2016 spliceosomal conformational changes to generate catalytic conformation2005, 2024 oogenesis2006 intron homing2024 intracellular mRNA localization2006 intein-mediated protein splicing2024 germarium-derived oocyte fate determination2006, 2007 ventral cord development2015 vegetative to reproductive phase transition of meristem2016 ubiquitin-dependent protein catabolic process2021 spermatogenesis2016 ribosomal large subunit export from nucleus2021 response to ionizing radiation2024 proteasome-mediated ubiquitin-dependent protein catabolic process2021 positive regulation of DNA repair2024 polarity specification of dorsal/ventral axis2006 polarity specification of anterior/posterior axis2006 osteoblast differentiation2017 oocyte karyosome formation2007 nucleobase-containing compound metabolic process2014 mitotic cell cycle2010 mitotic G2 DNA damage checkpoint signaling2024 meiotic cell cycle2024 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 maturation of 5.8S rRNA2020 female meiosis chromosome segregation2007 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 double-strand break repair2024 defense response to virus2024 cis assembly of pre-catalytic spliceosome2006 chromatin organization2024 cell population proliferation2012 RNA splicing, via transesterification reactions2007 DNA metabolic process2002

Cellular component: nucleus2006, 2009, 2012, 2014, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024 spliceosomal complex2002, 2004, 2006, 2007, 2014, 2016, 2020, 2024 cytosol2009, 2019, 2021, 2023, 2024 U5 snRNP2006, 2013, 2016, 2021, 2024 ribonucleoprotein complex2024 cytosolic ribosome2023, 2024 U4/U6 x U5 tri-snRNP complex2005, 2013, 2016, 2017, 2022, 2024 site of DNA damage2022, 2024 nucleoplasm2013, 2014, 2017, 2023, 2024 activating signal cointegrator 1 complex2016, 2024
DNA repair complex2022, 2024 cytoplasm2018, 2023, 2024 U2-type precatalytic spliceosome2019, 2024 U2-type catalytic step 1 spliceosome2019, 2024 catalytic step 2 spliceosome2010, 2011, 2024 nuclear speck2024 membrane2014, 2017, 2024 chromosome2024 small nuclear ribonucleoprotein complex2006, 2014 post-mRNA release spliceosomal complex2016, 2024 single-stranded DNA-dependent ATP-dependent DNA helicase complex2002 precatalytic spliceosome2010 plasmodesma2021 nucleolus2021 nuclear body2024 cytoplasmic stress granule2020 RQC-trigger complex2023 BRCA1-A complex2024

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 14/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 4/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 37/39 
Archea: 8/8 
Bacteria: 2/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»
Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
DEXHC_ARATH
TAIR»
1.6
BRR2A DExH-box ATP-dependent RNA helicase DExH12 (EC 3.6.4.13) (BRR2 homolog
A) (AtBRR2A) (Pre-mRNA-splicing helicase BRR2A) (Protein EMBRYO DEFECTIVE 1507)
Arabidopsis thaliana
TI:3702 None
 
DEXHD_ARATH
TAIR»
0.0
BRR2B DExH-box ATP-dependent RNA helicase DExH13 (EC 3.6.4.13)
(BRR2 homolog B) (AtBRR2B) (Pre-mRNA-splicing helicase BRR2B)
Arabidopsis thaliana
TI:3702 None
 
DEXHE_ARATH
TAIR»
0.5
BRR2C DExH-box ATP-dependent RNA helicase DExH14 (EC 3.6.4.13)
(BRR2 homolog C) (AtBRR2C) (Pre-mRNA-splicing helicase BRR2C)
Arabidopsis thaliana
TI:3702 None
 
HELQ_CAEEL
WormBase»
4.8
helq-1 Helicase POLQ-like (EC 3.6.4.12) Caenorhabditis elegans
TI:6239 None
 
Q9XWI1_CAEEL
WormBase»
0.0
CELE_Y54E2A.4 Y54E2A.4 Activating signal cointegrator
1 complex subunit 3
Caenorhabditis elegans
TI:6239 None
 
U520_CAEEL
WormBase»
1.5
snrp-200 U5 small nuclear ribonucleoprotein 200
kDa helicase (EC 3.6.4.13) (BRR2 homolog)
Caenorhabditis elegans
TI:6239 None
 
ASCC3_DANRE
ZFIN»
4.5
ascc3 Activating signal cointegrator 1
complex subunit 3 (EC 3.6.4.12)
Danio rerio
TI:7955 None
 
B0S754_DANRE
ZFIN»
1.0
fb63a09 Activating signal cointegrator 1 complex subunit 3
(U5 small nuclear ribonucleoprotein 200 kDa helicase)
Danio rerio
TI:7955 None
 
F1Q4P2_DANRE
ZFIN»
0.0
hel308 Helicase POLQ-like (EC
3.6.4.12) (Helicase, POLQ-like)
Danio rerio
TI:7955 None
 
ASCC3_DICDI
dictyBase»
1.5
ascc3 Activating signal cointegrator 1
complex subunit 3 (EC 3.6.4.12)
Dictyostelium discoideum
TI:44689 None
 
HELCL_DICDI
dictyBase»
1.5
ascc3l Activating signal cointegrator 1
complex subunit 3-like (EC 3.6.4.-)
Dictyostelium discoideum
TI:44689 None
 
Q54X98_DICDI
dictyBase»
0.0
DDB_G0279107 DNA-directed DNA polymerase Dictyostelium discoideum
TI:44689 None
 
HELQ_DROME
FlyBase»
10.4
mus301 Helicase POLQ-like (EC 3.6.4.12) (Mutagen-sensitive
protein 301) (Protein spindle-C) (Spindle-C)
Drosophila melanogaster
TI:7227 None
 
Q9VF56_DROME
FlyBase»
2.3
obe Obelus Drosophila melanogaster
TI:7227 None
 
U520_DROME
FlyBase»
6.9
Brr2 U5 small nuclear ribonucleoprotein 200 kDa
helicase (EC 3.6.4.13) (Protein lethal (3) 72Ab)
Drosophila melanogaster
TI:7227 None
 
A0A8V0XG98_CHICK
Ensembl»
0.0
HELQ Helicase, POLQ like Gallus gallus
TI:9031 None
   
A0A8V0Z655_CHICK
Ensembl»
0.0
SNRNP200 Activating signal cointegrator 1 complex subunit 3
(U5 small nuclear ribonucleoprotein 200 kDa helicase)
Gallus gallus
TI:9031 None
   
ASCC3_CHICK
Ensembl»
4.0
ascc3 Activating signal cointegrator 1
complex subunit 3 (EC 3.6.4.12)
Gallus gallus
TI:9031 None
 
ASCC3_HUMAN
Ensembl»
9.8
ASCC3 Activating signal cointegrator 1 complex subunit 3 (EC 3.6.4.12) (ASC-1 complex
subunit p200) (ASC1p200) (Helicase, ATP binding 1) (Trip4 complex subunit p200)
Homo sapiens
TI:9606 None
 
HELQ_HUMAN
Ensembl»
4.5
HELQ Helicase POLQ-like (EC 3.6.4.12)
(Mus308-like helicase) (POLQ-like helicase)
Homo sapiens
TI:9606 None
 
U520_HUMAN
Ensembl»
10.4
SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.4.13) (Activating signal cointegrator
1 complex subunit 3-like 1) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD)
Homo sapiens
TI:9606 None
 
ASCC3_MOUSE
Ensembl»
3.5
Ascc3 Activating signal cointegrator 1
complex subunit 3 (EC 3.6.4.12)
Mus musculus
TI:10090 None
 
HELQ_MOUSE
Ensembl»
3.8
Helq Helicase POLQ-like (EC 3.6.4.12)
(Mus308-like helicase) (POLQ-like helicase)
Mus musculus
TI:10090 None
 
U520_MOUSE
Ensembl»
1.0
Snrnp200 U5 small nuclear ribonucleoprotein 200 kDa helicase (EC
3.6.4.13) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD)
Mus musculus
TI:10090 None
 
ASCC3_RAT
RGD»
8.0
Ascc3 Activating signal cointegrator 1
complex subunit 3 (EC 3.6.4.12)
Rattus norvegicus
TI:10116 None
   
E9PT19_RAT
RGD»
3.0
Helq Helicase, POLQ-like Rattus norvegicus
TI:10116 None
   
U520_RAT
RGD»
4.5
Snrnp200 U5 small nuclear ribonucleoprotein 200 kDa helicase (EC
3.6.4.13) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD)
Rattus norvegicus
TI:10116 None
   
BRR2_YEAST
SGD»
4.8
BRR2 Pre-mRNA-splicing helicase BRR2
(EC 3.6.4.13) (Protein Snu246)
Saccharomyces cerevisiae
TI:4932 None
 
SLH1_YEAST
SGD»
9.4
SLH1 RQC trigger complex helicase SLH1 (EC
3.6.4.13) (Antiviral helicase SLH1) (SKI2-like helicase 1)
Saccharomyces cerevisiae
TI:4932 None
 
BRR2_SCHPO
PomBase»
3.2
brr2 Pre-mRNA-splicing factor brr2 (EC 3.6.4.13)
(Pre-mRNA-splicing factor spp41) (Pre-mRNA-splicing helicase BRR2)
Schizosaccharomyces pombe
TI:4896 None
 
SLH1_SCHPO
PomBase»
1.5
slh1 RQC trigger complex helicase slh1 (Meiotically up-regulated
gene 81 protein) (Putative helicase mug81) (EC 3.6.4.13)
Schizosaccharomyces pombe
TI:4896 None