Collated Gene Ontology terms

Biological process: RNA binding(2013, 2014, 2017, 2024) RNA polymerase binding(2021, 2024) transferase activity(2024) proline-rich region binding(2012) protein serine/threonine kinase activity(2024) protein kinase activity(2024) microtubule binding(2024) metal ion binding(2024) RNA polymerase II CTD heptapeptide repeat kinase activity(2023) ATP binding(2024)

Molecular function: mRNA cis splicing, via spliceosome2024 mRNA splicing, via spliceosome2006, 2010, 2013, 2017, 2018, 2024 RNA splicing2021, 2024 mRNA processing2024 regulation of cytokinesis2011 regulation of cell shape2011 cytoskeleton organization2011 cell migration2011 signal transduction2024 mRNA 5'-splice site recognition2007, 2018
vesicle-mediated transport2024 regulation of transcription by RNA polymerase II2024 protein phosphorylation2024 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 cell surface receptor signaling pathway2024 cell division2024 Golgi vesicle transport2024

Cellular component: U1 snRNP2006, 2013, 2014, 2017, 2018, 2024 U2-type prespliceosome2013, 2017, 2024 nucleus2009, 2012, 2013, 2017, 2018, 2024 membrane2014, 2024 nuclear speck2024 mediator complex2012, 2024 nuclear matrix2010, 2024 spliceosomal complex2018, 2024 ribonucleoprotein complex2024 cytosolic large ribosomal subunit2023
commitment complex2005, 2018 prespliceosome2018 precatalytic spliceosome2010 nucleoplasm2022 histone locus body2021 TRAPP complex2024 Golgi apparatus2024

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 14/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 1/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 36/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
PR40A_ARATH
TAIR»
1.6
PRP40A Pre-mRNA-processing protein 40A (AtPRP40a) Arabidopsis thaliana
TI:3702 None
 
PR40B_ARATH
TAIR»
1.6
PRP40B Pre-mRNA-processing protein 40B (AtPRP40b) Arabidopsis thaliana
TI:3702 None
 
YO61_CAEEL
WormBase»
1.0
ZK1098.1 WW domain-containing protein ZK1098.1 Caenorhabditis elegans
TI:6239 None
 
Q7ZUE4_DANRE
ZFIN»
1.0
fb18h07 PRP40 pre-mRNA processing factor 40 homolog A (Yeast) (PRP40
pre-mRNA-processing factor 40 homolog A) (Pre-mRNA-processing factor 40 homolog A)		 Danio rerio
TI:7955 None
 
Q54QY2_DICDI
dictyBase»
1.5
prp40 WW domain-containing protein Dictyostelium discoideum
TI:44689 None
 
Q9VQK5_DROME
FlyBase»
2.5
Prp40 LD24714p (Pre-mRNA processing factor 40) Drosophila melanogaster
TI:7227 None
 
A0A8V0Y929_CHICK
Ensembl»
0.0
PRPF40A Pre-mRNA processing factor 40 homolog A Gallus gallus
TI:9031 None
   
PR40A_HUMAN
Ensembl»
4.7
PRPF40A Pre-mRNA-processing factor 40 homolog A (Fas ligand-associated factor 1) (Formin-binding protein 11) (Formin-binding protein 3)
(Huntingtin yeast partner A) (Huntingtin-interacting protein 10) (HIP-10) (Huntingtin-interacting protein A) (Renal carcinoma antigen NY-REN-6)		 Homo sapiens
TI:9606 None
 
PR40B_HUMAN
Ensembl»
1.0
PRPF40B Pre-mRNA-processing factor 40 homolog B (Huntingtin
yeast partner C) (Huntingtin-interacting protein C)		 Homo sapiens
TI:9606 None
 
PR40A_MOUSE
Ensembl»
2.8
Prpf40a Pre-mRNA-processing factor 40 homolog A (Formin-binding
protein 11) (FBP-11) (Formin-binding protein 3)		 Mus musculus
TI:10090 None
 
PR40B_MOUSE
AG»
0.0
Prpf40b Pre-mRNA-processing factor 40 homolog B (Huntingtin
yeast partner C) (Huntingtin-interacting protein C)		 Mus musculus
TI:10090 None
 
A0A8I5ZQT3_RAT
RGD»
1.0
Prpf40b Pre-mRNA processing factor 40 homolog B Rattus norvegicus
TI:10116 None
   
A0A8I5ZVI3_RAT
RGD»
3.5
Prpf40a Pre-mRNA processing factor 40 homolog A Rattus norvegicus
TI:10116 None
   
PRP40_YEAST
SGD»
3.8
PRP40 Pre-mRNA-processing protein PRP40 Saccharomyces cerevisiae
TI:4932 None
 
URN1_YEAST
SGD»
1.0
URN1 Pre-mRNA-splicing factor URN1 (U2-U5-U6 snRNP, RES
complex and NTC-interacting pre-mRNA-splicing factor 1)		 Saccharomyces cerevisiae
TI:4932 None
 
PRP40_SCHPO
PomBase»
2.9
prp40 Pre-mRNA-processing protein prp40 Schizosaccharomyces pombe
TI:4896 None