Collated Gene Ontology terms

Biological process: RNA binding(2024) pre-mRNA intronic binding(2014, 2017, 2024) U12 snRNA binding(2014, 2017, 2024) nucleic acid binding(2012, 2024) U1 snRNA binding(2020) mRNA binding(2006) hydrolase activity(2024)

Molecular function: mRNA splicing, via spliceosome2012, 2014, 2017, 2019, 2024 inflorescence development2014, 2024 pancreas development2014, 2024 liver development2014, 2024 digestive tract development2014, 2024 RNA splicing2009, 2024 mRNA processing2024

Cellular component: U12-type spliceosomal complex2009, 2012, 2014, 2017, 2024 nucleus2008, 2014, 2024 ribonucleoprotein complex2024 nucleoplasm2015, 2023, 2024 spliceosomal complex2024 U1 snRNP2017 U12 snRNP2012 U11/U12 snRNP2012

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 0/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 3/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 36/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
A0A0B4LGA2_DROME
FlyBase»
3.5
65K RRM domain-containing protein Drosophila melanogaster
TI:7227 None
 
A0A8V0Z205_CHICK
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Gallus gallus
TI:9031 None
   
A0A8V0ZU58_CHICK
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3 Gallus gallus
TI:9031 None
   
D3ZTA4_RAT
RGD»
1.5
Rbm41 RNA binding motif protein 41 Rattus norvegicus
TI:10116 None
   
Q55CC1_DICDI
dictyBase»
1.5
DDB_G0270734 RRM domain-containing protein Dictyostelium discoideum
TI:44689 None
 
Q5U3Q9_DANRE
ZFIN»
1.5
zgc:101754 RNA binding motif protein
41 (RNA-binding protein 41)		 Danio rerio
TI:7955 None
 
RBM41_HUMAN
Ensembl»
1.5
RBM41 RNA-binding protein 41
(RNA-binding motif protein 41)		 Homo sapiens
TI:9606 None
 
RBM41_MOUSE
Ensembl»
0.0
Rbm41 RNA-binding protein 41
(RNA-binding motif protein 41)		 Mus musculus
TI:10090 None
 
RNPC3_DANRE
ZFIN»
4.7
rnpc3 RNA-binding region-containing protein
3 (RNA-binding protein 40)		 Danio rerio
TI:7955 None
 
RNPC3_HUMAN
Ensembl»
2.5
RNPC3 RNA-binding region-containing protein 3 (RNA-binding motif protein 40) (RNA-binding protein 40) (U11/U12
small nuclear ribonucleoprotein 65 kDa protein) (U11/U12 snRNP 65 kDa protein) (U11/U12-65K)		 Homo sapiens
TI:9606 None
 
RNPC3_MOUSE
Ensembl»
0.0
Rnpc3 RNA-binding region-containing protein 3 (RNA-binding
motif protein 40) (RNA-binding protein 40)		 Mus musculus
TI:10090 None
 
RNPC3_RAT
RGD»
1.5
Rnpc3 RNA-binding region-containing protein 3 (RNA-binding
motif protein 40) (RNA-binding protein 40)		 Rattus norvegicus
TI:10116 None
 
U1165_ARATH
TAIR»
4.0
SNRNP65 U11/U12 small nuclear ribonucleoprotein 65 kDa
protein (U11/U12 snRNP 65 kDa protein) (U11/U12-65K)		 Arabidopsis thaliana
TI:3702 None