Collated Gene Ontology terms

Biological process: RNA binding(2024) pre-mRNA intronic binding(2014, 2017, 2024) U12 snRNA binding(2014, 2017, 2024) nucleic acid binding(2012, 2024) U1 snRNA binding(2020) mRNA binding(2006) hydrolase activity(2024)

Molecular function: mRNA splicing, via spliceosome2012, 2014, 2017, 2019, 2024 inflorescence development2014, 2024 pancreas development2014, 2024 liver development2014, 2024 digestive tract development2014, 2024 RNA splicing2009, 2024 mRNA processing2024

Cellular component: U12-type spliceosomal complex2009, 2012, 2014, 2017, 2024 nucleus2008, 2014, 2024 ribonucleoprotein complex2024 nucleoplasm2015, 2023, 2024 spliceosomal complex2024 U1 snRNP2017 U12 snRNP2012 U11/U12 snRNP2012

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 0/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 3/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 2/3 
Excavates: 0/4 
Harosa: 0/4 
Hacrobia: 0/0 
Plants: 36/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Key only] GO terms Seq. links Protein domain links
U5CWQ2_AMBTC
EnsemblPlants»
0.0
AMTR_s00038p00125360 RRM domain-containing protein Amborella trichopoda
TI:13333 None
 
G1KAA4_ANOCA
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3 Anolis carolinensis
TI:28377 None
   
H9GKQ8_ANOCA
Ensembl»
0.0
RRM domain-containing protein Anolis carolinensis
TI:28377 None
   
Q5TWC9_ANOGA
EnsemblMetazoa»
0.0
3289936 RNA-binding region-containing protein 3 Anopheles gambiae
TI:7165 None
 
U1165_ARATH
TAIR»
4.0
SNRNP65 U11/U12 small nuclear ribonucleoprotein 65 kDa
protein (U11/U12 snRNP 65 kDa protein) (U11/U12-65K)		 Arabidopsis thaliana
TI:3702 None
 
F4NX39_BATDJ
EnsemblBacteria»
0.0
BATDEDRAFT_86091 RRM domain-containing protein Batrachochytrium dendrobatidis
TI:109871 None
 
F1MJQ8_BOVIN
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Bos taurus
TI:9913 None
   
RNPC3_BOVIN
CTD»
0.0
RNPC3 RNA-binding region-containing protein 3 (RNA-binding
motif protein 40) (RNA-binding protein 40)		 Bos taurus
TI:9913 None
 
I1HH19_BRADI
EnsemblPlants»
0.0
100832030 RRM domain-containing protein Brachypodium distachyon
TI:15368 None
 
A0A9J7L0D4_BRAFL
CTD»
0.0
LOC118414128 RNA-binding region-containing protein 3 Branchiostoma floridae
TI:7739 None
   
A0A078H431_BRANA
EnsemblPlants»
0.0
BnaCnng06730D (rape) hypothetical
protein (BnaCnng06730D protein)		 Brassica napus
TI:3708 None
 
M4DPY3_BRACM
EnsemblPlants»
0.0
RRM domain-containing protein Brassica campestris
TI:3711 None
   
A0A8I3NH24_CANLF
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Canis lupus
TI:9612 None
   
A0A8I3NXL5_CANLF
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Canis lupus
TI:9612 None
   
A0A2G2YZH0_CAPAN
EnsemblPlants»
0.0
T459_22318 Uncharacterized protein Capsicum annuum
TI:4072 None 		 
 
H2XSI8_CIOIN
Ensembl»
0.0
LOC100180841 RNA-binding region-containing protein 3 Ciona intestinalis
TI:7719 None
 
A0A067CZ25_CITSI
Ensembl»
0.0
CISIN_1g036790mg Uncharacterized protein Citrus sinensis
TI:2711 None 		 
 
A0A067DNM6_CITSI
Ensembl»
0.0
CISIN_1g033648mg RRM domain-containing protein Citrus sinensis
TI:2711 None
 
A0A067DRB0_CITSI
Ensembl»
0.0
CISIN_1g039336mg RRM domain-containing protein Citrus sinensis
TI:2711 None
 
A0A067DVD7_CITSI
Ensembl»
0.0
CISIN_1g043634mg RRM domain-containing protein Citrus sinensis
TI:2711 None
 
A0A0A0KCT1_CUCSA
EnsemblPlants»
0.0
Csa_6G118290 RRM domain-containing protein Cucumis sativus
TI:3659 None
 
Q5U3Q9_DANRE
ZFIN»
1.5
zgc:101754 RNA binding motif protein
41 (RNA-binding protein 41)		 Danio rerio
TI:7955 None
 
RNPC3_DANRE
ZFIN»
4.7
rnpc3 RNA-binding region-containing protein
3 (RNA-binding protein 40)		 Danio rerio
TI:7955 None
 
E9G5E7_DAPPU
EnsemblMetazoa»
0.0
DAPPUDRAFT_313833 RNA-binding region-containing protein 3 Daphnia pulex
TI:6669 None
 
F0ZCN0_DICPU
EnsemblProtists»
0.0
DICPUDRAFT_149032 RRM domain-containing protein Dictyostelium purpureum
TI:5786 None
 
Q55CC1_DICDI
dictyBase»
1.5
DDB_G0270734 RRM domain-containing protein Dictyostelium discoideum
TI:44689 None
 
A0A0B4LGA2_DROME
FlyBase»
3.5
65K RRM domain-containing protein Drosophila melanogaster
TI:7227 None
 
C8VFF2_EMENI
EnsemblFungi»
0.0
ANIA_05779 U1 small nuclear ribonucleoprotein
A, putative (AFU_orthologue AFUA_6G06490)		 Emericella nidulans
TI:162425 None
 
A0A3Q2GZN1_HORSE
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Equus caballus
TI:9796 None
   
A0A022QCY6_ERYGU
EnsemblFungi»
0.0
MIMGU_mgv1a010145mg RRM domain-containing protein Erythranthe guttata
TI:4155 None
 
M3VXN6_FELCA
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Felis catus
TI:9685 None
 
M3X571_FELCA
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Felis catus
TI:9685 None
 
A0A8V0Z205_CHICK
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Gallus gallus
TI:9031 None
   
A0A8V0ZU58_CHICK
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3 Gallus gallus
TI:9031 None
   
A0A0R0EL90_SOYBN
EnsemblPlants»
0.0
100814307 RRM domain-containing protein Glycine max
TI:3847 None
 
I1ML41_SOYBN
EnsemblPlants»
0.0
100818499 RRM domain-containing protein Glycine max
TI:3847 None
 
A0A2I2Z1K6_GORGO
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Gorilla gorilla
TI:9593 None
 
A0A2I2ZFB2_GORGO
Ensembl»
0.0
RRM domain-containing protein Gorilla gorilla
TI:9593 None
 
A0A1U8IAY8_GOSHI
Ensembl»
0.0
LOC107892375 U11/U12 small nuclear ribonucleoprotein
65 kDa protein-like isoform X1		 Gossypium hirsutum
TI:3635 None
   
A0A1U8PTD7_GOSHI
Ensembl»
0.0
LOC107961890 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein-like		 Gossypium hirsutum
TI:3635 None
   
A0A251VHV5_HELAN
EnsemblPlants»
0.0
HannXRQ_Chr02g0054501 HanXRQr2_Chr02g0079741 Putative RNA-binding (RRM/RBD/RNP motifs) family protein (RNA
recognition motif domain, nucleotide-binding alpha-beta plait domain superfamily)		 Helianthus annuus
TI:4232 None
 
T1FY95_HELRO
EnsemblMetazoa»
0.0
20213793 RNA-binding region-containing protein 3 Helobdella robusta
TI:6412 None
 
RBM41_HUMAN
Ensembl»
1.5
RBM41 RNA-binding protein 41
(RNA-binding motif protein 41)		 Homo sapiens
TI:9606 None
 
RNPC3_HUMAN
Ensembl»
2.5
RNPC3 RNA-binding region-containing protein 3 (RNA-binding motif protein 40) (RNA-binding protein 40) (U11/U12
small nuclear ribonucleoprotein 65 kDa protein) (U11/U12 snRNP 65 kDa protein) (U11/U12-65K)		 Homo sapiens
TI:9606 None
 
A0A8I6WJ31_HORVV
EnsemblPlants»
0.0
RRM domain-containing protein Hordeum vulgare
TI:4513 None
   
B7PQ08_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW018537 U1 small nuclear ribonucleoprotein A, putative Ixodes scapularis
TI:6945 None
 
B7QBY1_IXOSC
EnsemblMetazoa»
0.0
IscW_ISCW012575 RNA-binding region-containing protein 3 Ixodes scapularis
TI:6945 None
 
A0A6P9F735_JUGRE
EnsemblPlants»
0.0
LOC109001840 U11/U12 small nuclear ribonucleoprotein
65 kDa protein isoform X1		 Juglans regia
TI:51240 None
   
A0A1Y1I0X7_KLENI
EnsemblPlants»
0.0
KFL_001550020 RNA binding protein Klebsormidium nitens
TI:105231 None
 
A0A1Y1IAY2_KLENI
EnsemblPlants»
0.0
KFL_004020110 RNA recognition motif containing protein Klebsormidium nitens
TI:105231 None
 
W5MMU1_LEPOC
Ensembl»
0.0
RNA-binding region-containing protein 3 Lepisosteus oculatus
TI:7918 None
 
W5NCQ8_LEPOC
Ensembl»
0.0
RNA binding motif protein 41 Lepisosteus oculatus
TI:7918 None
 
F7EVL6_MACMU
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Macaca mulatta
TI:9544 None
   
F7FD98_MACMU
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Macaca mulatta
TI:9544 None
   
A0A2C9VGF6_MANES
EnsemblPlants»
0.0
MANES_08G148100 RRM domain-containing protein Manihot esculenta
TI:3983 None
 
A0A2R6WVN5_MARPO
EnsemblPlants»
0.0
MARPO_0054s0019 RRM domain-containing protein Marchantia polymorpha
TI:3197 None
 
G7KZE1_MEDTR
EnsemblPlants»
0.0
11435764 Putative nucleotide-binding alpha-beta plait
domain-containing protein (RNA recognition motif)		 Medicago truncatula
TI:3880 None
 
A0A5F8GH80_MONDO
Ensembl»
0.0
RNA binding motif protein 41 Monodelphis domestica
TI:13616 None 		     
A0A5F8H7E7_MONDO
Ensembl»
0.0
RRM domain-containing protein Monodelphis domestica
TI:13616 None
   
A0A5F8HHH3_MONDO
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Monodelphis domestica
TI:13616 None
   
RBM41_MOUSE
Ensembl»
0.0
Rbm41 RNA-binding protein 41
(RNA-binding motif protein 41)		 Mus musculus
TI:10090 None
 
RNPC3_MOUSE
Ensembl»
0.0
Rnpc3 RNA-binding region-containing protein 3 (RNA-binding
motif protein 40) (RNA-binding protein 40)		 Mus musculus
TI:10090 None
 
A0A804KKG2_MUSAM
EnsemblPlants»
0.0
GSMUA_235420.1 (wild Malaysian banana) hypothetical protein Musa acuminata
TI:4641 None
 
A0A1U7Z6B4_NELNU
EnsemblBacteria»
0.0
LOC104590833 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein-like		 Nelumbo nucifera
TI:4432 None
   
A0A1U7ZTT1_NELNU
EnsemblBacteria»
0.0
LOC104597725 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein-like		 Nelumbo nucifera
TI:4432 None
   
A7RZI8_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g234681 RNA-binding region-containing protein 3 Nematostella vectensis
TI:45351 None
 
A7SNN4_NEMVE
EnsemblMetazoa»
0.0
NEMVEDRAFT_v1g215025 RRM domain-containing protein Nematostella vectensis
TI:45351 None
 
A0A1S3WYZ5_TOBAC
EnsemblFungi»
0.0
LOC107759432 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein-like		 Nicotiana tabacum
TI:4097 None
   
A0A1S3YKT0_TOBAC
EnsemblFungi»
0.0
LOC107777363 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein-like		 Nicotiana tabacum
TI:4097 None
   
A0A1S3YN98_TOBAC
EnsemblFungi»
0.0
LOC107777783 U11/U12 small nuclear ribonucleoprotein
65 kDa protein isoform X1		 Nicotiana tabacum
TI:4097 None
   
A0A1S4CIC8_TOBAC
EnsemblFungi»
0.0
LOC107819191 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein-like		 Nicotiana tabacum
TI:4097 None
   
A0A6I8MX65_ORNAN
Ensembl»
0.0
LOC100083572 RRM domain-containing protein Ornithorhynchus anatinus
TI:9258 None
   
A0A6I8MZQ3_ORNAN
Ensembl»
0.0
RRM domain-containing protein Ornithorhynchus anatinus
TI:9258 None
   
F7CGT9_ORNAN
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Ornithorhynchus anatinus
TI:9258 None
   
Q10M15_ORYSJ
EnsemblPlants»
0.0
LOC_Os03g21020 Os03g0326600 Os03g0326600 protein (RNA recognition
motif family protein, expressed)		 Oryza sativa
TI:4530 None
 
H2LM89_ORYLA
Ensembl»
0.0
rnpc3 RNA-binding region-containing protein 3 Oryzias latipes
TI:8090 None
   
H2MKM4_ORYLA
Ensembl»
0.0
rbm41 RNA binding motif protein 41 Oryzias latipes
TI:8090 None
   
A0A2I3RPZ6_PANTR
Ensembl»
0.0
RRM domain-containing protein Pan troglodytes
TI:9598 None
 
H2QZU7_PANTR
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Pan troglodytes
TI:9598 None
 
H2R4L8_PANTR
Ensembl»
0.0
RBM41 RNA binding motif protein 41 Pan troglodytes
TI:9598 None
 
A0A2K1KK24_PHYPA
EnsemblPlants»
0.0
PHYPA_007803 RRM domain-containing protein Physcomitrium patens
TI:3218 None
 
A9S5W6_PHYPA
EnsemblPlants»
0.0
PHYPA_029745 RRM domain-containing protein Physcomitrium patens
TI:3218 None
 
A0A3N7GB13_POPTR
EnsemblPlants»
0.0
POPTR_019G031701 Uncharacterized protein Populus trichocarpa
TI:3694 None
 
B9I5U9_POPTR
EnsemblPlants»
0.0
POPTR_013G054300 RRM domain-containing protein Populus trichocarpa
TI:3694 None
 
M5W4H5_PRUPE
EnsemblPlants»
0.0
PRUPE_6G097200 RRM domain-containing protein Prunus persica
TI:3760 None
 
D3ZTA4_RAT
RGD»
1.5
Rbm41 RNA binding motif protein 41 Rattus norvegicus
TI:10116 None
   
RNPC3_RAT
RGD»
1.5
Rnpc3 RNA-binding region-containing protein 3 (RNA-binding
motif protein 40) (RNA-binding protein 40)		 Rattus norvegicus
TI:10116 None
 
B9SHJ5_RICCO
EnsemblBacteria»
0.0
RCOM_1122320 RNA binding protein, putative Ricinus communis
TI:3988 None
 
D8RFH7_SELML
EnsemblPlants»
0.0
SELMODRAFT_114507 SELMODRAFT_92344 RRM domain-containing protein Selaginella moellendorffii
TI:88036 None
 
D8SVF8_SELML
EnsemblPlants»
0.0
SELMODRAFT_235257 RRM domain-containing protein Selaginella moellendorffii
TI:88036 None
 
K4A9P3_SETIT
EnsemblPlants»
0.0
101779063 RRM domain-containing protein Setaria italica
TI:4555 None
 
A0A3Q7ETT1_SOLLC
EnsemblPlants»
0.0
101247760 RRM domain-containing protein Solanum lycopersicum
TI:4081 None
   
M0ZMU2_SOLTU
EnsemblPlants»
0.0
102602989 RNA binding protein Solanum tuberosum
TI:4113 None
   
C5X1Q3_SORBI
EnsemblPlants»
0.0
SORBI_3001G386100 RRM domain-containing protein Sorghum bicolor
TI:4558 None
 
A0A7M7RD02_STRPU
EnsemblMetazoa»
0.0
RNA-binding region-containing protein 3 Strongylocentrotus purpuratus
TI:7668 None
   
F1RXK8_PIG
Ensembl»
0.0
RBM41 RNA binding motif protein 41
(RNA-binding protein 41 isoform 1)		 Sus scrofa
TI:9823 None
 
F1S572_PIG
Ensembl»
0.0
RNPC3 RNA-binding region-containing protein 3
(RNA-binding motif protein 40)		 Sus scrofa
TI:9823 None
   
A0A061F1F8_THECC
EnsemblPlants»
0.0
TCM_026027 RNA-binding family protein isoform 4 Theobroma cacao
TI:3641 None
 
D2A1F1_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_07748 RNA-binding protein 41-like Protein Tribolium castaneum
TI:7070 None
 
D6WGC1_TRICA
EnsemblMetazoa»
0.0
AUGUSTUS-3.0.2_10372 RNA-binding region-containing protein 3 Tribolium castaneum
TI:7070 None
 
B3RYS2_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_8568 RRM domain-containing protein Trichoplax adhaerens
TI:10228 None
 
B3S354_TRIAD
EnsemblMetazoa»
0.0
TRIADDRAFT_58601 RNA-binding region-containing protein 3 Trichoplax adhaerens
TI:10228 None
 
A0A3B5XYX4_WHEAT
EnsemblPlants»
0.0
RRM domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B5YVZ9_WHEAT
EnsemblPlants»
0.0
RRM domain-containing protein Triticum aestivum
TI:4565 None
   
A0A3B5ZTG3_WHEAT
EnsemblPlants»
0.0
CFC21_011460 RRM domain-containing protein Triticum aestivum
TI:4565 None
 
A0A3B6NL83_WHEAT
EnsemblPlants»
0.0
CFC21_082353 RRM domain-containing protein Triticum aestivum
TI:4565 None
 
A0A3B6PHS4_WHEAT
EnsemblPlants»
0.0
CFC21_087100 RRM domain-containing protein Triticum aestivum
TI:4565 None
 
A0A3B6QDM1_WHEAT
EnsemblPlants»
0.0
CFC21_091562 RRM domain-containing protein Triticum aestivum
TI:4565 None
 
D7SNK2_VITVI
EnsemblPlants»
0.0
VIT_05s0029g01100 RRM domain-containing protein Vitis vinifera
TI:29760 None
 
F6HYT0_VITVI
EnsemblPlants»
0.0
VIT_05s0102g00500 RRM domain-containing protein Vitis vinifera
TI:29760 None
 
A0A1L8GN60_XENLA
Xenbase»
0.0
rnpc3.L RNA-binding region-containing protein 3 Xenopus laevis
TI:8355 None
   
Q07G30_XENTR
Xenbase»
0.0
rnpc3 RNA-binding region-containing protein 3 Xenopus tropicalis
TI:8364 None
 
Q6C824_YARLI
EnsemblFungi»
0.0
YALI0_D23375g YALI0D23375p Yarrowia lipolytica
TI:4952 None
 
B4FG83_MAIZE
EnsemblPlants»
0.0
100193767 U11/U12 small nuclear
ribonucleoprotein 65 kDa protein		 Zea mays
TI:4577 None
 
A0A0K9Q045_ZOSMR
EnsemblPlants»
0.0
ZOSMA_13G00310 Putative RNA binding protein Zostera marina
TI:29655 None