Cluster UKP01272
- UNCHARACTERIZED
Standard knownness: 2.6; Custom knownness: None; Num. species: 94; Orthology database: Panther19.0; Protein members: 223
Collated Gene Ontology terms
Molecular function:
mRNA processing2024
RNA splicing2024
mRNA splicing, via spliceosome2009, 2010, 2016, 2018, 2024
response to salt stress2006, 2024
response to lithium ion2016, 2024
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)2013, 2024
regulation of G2/M transition of mitotic cell cycle2009
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021
mRNA cis splicing, via spliceosome2005
filamentous growth of a population of unicellular organisms in response to starvation2014
filamentous growth of a population of unicellular organisms in response to biotic stimulus2014
filamentous growth2014
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021
cellular response to starvation2014
Cellular component: nucleus2009, 2016, 2018, 2024 spliceosomal complex2016, 2024 precatalytic spliceosome2010, 2017, 2018, 2024 U2-type precatalytic spliceosome2018, 2024 nucleoplasm2016, 2023, 2024 U4/U6 x U5 tri-snRNP complex2013, 2016, 2024 membrane2024 protein-containing complex2011 cytosol2009 catalytic step 2 spliceosome2010
Phylogenetic distribution
| Chordates: | 22/21 |  |
| Echinoderms: | 0/0 | |
| Hemichordates: | 1/1 | |
| Annelids: | 1/1 | |
| Molluscs: | 0/0 | |
| Bryozoans: | 0/0 | |
| Platyhelminthes: | 0/0 | |
| Rotifers: | 0/0 | |
| Nematodes: | 3/3 | |
| Arthropods: | 5/5 | |
| Tardigrades: | 0/0 | |
| Placozoa: | 1/1 | |
| Cnidaria: | 1/1 | |
| Porifera: | 0/0 | |
| Choanoflagellates+: | 14/1 | |
| Dikarya: | 0/14 | |
| Fungi (other): | 0/1 | |
| Protozoa: | 3/3 | |
| Excavates: | 2/4 | |
| Harosa: | 4/4 | |
| Hacrobia: | 0/0 | |
| Plants: | 37/39 | |
| Archea: | 0/8 | |
| Bacteria: | 0/35 |
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Proteins
| UniProt ID Organism DB» |
Standard knownness | clustom knownness | Gene name | Description | Species [Show all] | GO terms | Seq. links | Protein domain links | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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D3ZGL5_RAT RGD» |
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Prpf38a | Pre-mRNA-splicing factor 38A |
Rattus norvegicus TI:10116 None |
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PR38A_HUMAN Ensembl» |
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PRPF38A | Pre-mRNA-splicing factor 38A |
Homo sapiens TI:9606 None |
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PRP38_YEAST SGD» |
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PRP38 | Pre-mRNA-splicing factor 38 (Pre-mRNA-processing factor 38) |
Saccharomyces cerevisiae TI:4932 None |
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PR38A_MOUSE Ensembl» |
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Prpf38a | Pre-mRNA-splicing factor 38A |
Mus musculus TI:10090 None |
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PRP38_DROME FlyBase» |
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Prp38 | Pre-mRNA-splicing factor 38 |
Drosophila melanogaster TI:7227 None |
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PRP38_SCHPO PomBase» |
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prp38 | Pre-mRNA-splicing factor 38 |
Schizosaccharomyces pombe TI:4896 None |
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E1C6A8_CHICK Ensembl» |
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PRPF38A | Pre-mRNA-splicing factor 38A |
Gallus gallus TI:9031 None |
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PR38A_DANRE ZFIN» |
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prpf38a | Pre-mRNA-splicing factor 38A |
Danio rerio TI:7955 None |
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Q9VYE9_DROME FlyBase» |
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Dmel\CG1622 | Pre-mRNA-splicing factor 38 |
Drosophila melanogaster TI:7227 None |
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E1BVP9_CHICK Ensembl» |
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PRPF38B | Pre-mRNA-splicing factor 38B |
Gallus gallus TI:9031 None |
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PR38B_HUMAN Ensembl» |
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PRPF38B | Pre-mRNA-splicing factor 38B (Sarcoma antigen NY-SAR-27) |
Homo sapiens TI:9606 None |
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Q18942_CAEEL WormBase» |
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prp-38 | Pre-mRNA-splicing factor 38 |
Caenorhabditis elegans TI:6239 None |
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Q54J00_DICDI dictyBase» |
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prpf38b | Pre-mRNA-splicing factor 38 |
Dictyostelium discoideum TI:44689 None |
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Q86IV3_DICDI dictyBase» |
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prpf38a | Pre-mRNA-splicing factor 38 |
Dictyostelium discoideum TI:44689 None |
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Q95Y35_CAEEL WormBase» |
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CELE_Y108G3AL.2 Y108G3AL.2 | Pre-mRNA-splicing factor 38 |
Caenorhabditis elegans TI:6239 None |
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SRL1_ARATH TAIR» |
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SRL1 | Pre-mRNA splicing factor SR-like 1 (AtSRL1) |
Arabidopsis thaliana TI:3702 None |
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PR38B_DANRE ZFIN» |
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prpf38b | Pre-mRNA-splicing factor 38B |
Danio rerio TI:7955 None |
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PR38B_RAT RGD» |
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Prpf38b | Pre-mRNA-splicing factor 38B |
Rattus norvegicus TI:10116 None |
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PR38B_MOUSE Ensembl» |
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Prpf38b | Pre-mRNA-splicing factor 38B |
Mus musculus TI:10090 None |
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PRP38_ARATH TAIR» |
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PRP38 | Pre-mRNA-splicing factor 38 |
Arabidopsis thaliana TI:3702 None |
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