Collated Gene Ontology terms

Biological process: RNA binding(2014)

Molecular function: mRNA processing2024 RNA splicing2024 mRNA splicing, via spliceosome2009, 2010, 2016, 2018, 2024 response to salt stress2006, 2024 response to lithium ion2016, 2024 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)2013, 2024 regulation of G2/M transition of mitotic cell cycle2009 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 mRNA cis splicing, via spliceosome2005 filamentous growth of a population of unicellular organisms in response to starvation2014
filamentous growth of a population of unicellular organisms in response to biotic stimulus2014 filamentous growth2014 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2021 cellular response to starvation2014

Cellular component: nucleus2009, 2016, 2018, 2024 spliceosomal complex2016, 2024 precatalytic spliceosome2010, 2017, 2018, 2024 U2-type precatalytic spliceosome2018, 2024 nucleoplasm2016, 2023, 2024 U4/U6 x U5 tri-snRNP complex2013, 2016, 2024 membrane2024 protein-containing complex2011 cytosol2009 catalytic step 2 spliceosome2010

Phylogenetic distribution

Chordates: 22/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 1/1 
Porifera: 0/0 
Choanoflagellates+: 14/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 3/3 
Excavates: 2/4 
Harosa: 4/4 
Hacrobia: 0/0 
Plants: 37/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 0 2 4 6 8 10 Knownness

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Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
Q95Y35_CAEEL
WormBase»
0.0
CELE_Y108G3AL.2 Y108G3AL.2 Pre-mRNA-splicing factor 38 Caenorhabditis elegans
TI:6239 None
 
Q9VYE9_DROME
FlyBase»
1.0
Dmel\CG1622 Pre-mRNA-splicing factor 38 Drosophila melanogaster
TI:7227 None
 
PRP38_ARATH
TAIR»
0.0
PRP38 Pre-mRNA-splicing factor 38 Arabidopsis thaliana
TI:3702 None
 
PRP38_YEAST
SGD»
1.4
PRP38 Pre-mRNA-splicing factor 38
(Pre-mRNA-processing factor 38)		 Saccharomyces cerevisiae
TI:4932 None
 
E1C6A8_CHICK
Ensembl»
0.0
PRPF38A Pre-mRNA-splicing factor 38A Gallus gallus
TI:9031 None
   
PR38A_HUMAN
Ensembl»
2.1
PRPF38A Pre-mRNA-splicing factor 38A Homo sapiens
TI:9606 None
 
E1BVP9_CHICK
Ensembl»
0.0
PRPF38B Pre-mRNA-splicing factor 38B Gallus gallus
TI:9031 None
   
PR38B_HUMAN
Ensembl»
0.5
PRPF38B Pre-mRNA-splicing factor 38B
(Sarcoma antigen NY-SAR-27)		 Homo sapiens
TI:9606 None
 
PRP38_DROME
FlyBase»
2.6
Prp38 Pre-mRNA-splicing factor 38 Drosophila melanogaster
TI:7227 None
 
D3ZGL5_RAT
RGD»
0.5
Prpf38a Pre-mRNA-splicing factor 38A Rattus norvegicus
TI:10116 None
   
PR38A_MOUSE
Ensembl»
0.5
Prpf38a Pre-mRNA-splicing factor 38A Mus musculus
TI:10090 None
 
PR38B_MOUSE
Ensembl»
0.0
Prpf38b Pre-mRNA-splicing factor 38B Mus musculus
TI:10090 None
 
PR38B_RAT
RGD»
0.0
Prpf38b Pre-mRNA-splicing factor 38B Rattus norvegicus
TI:10116 None
 
SRL1_ARATH
TAIR»
1.6
SRL1 Pre-mRNA splicing factor SR-like 1 (AtSRL1) Arabidopsis thaliana
TI:3702 None
 
Q18942_CAEEL
WormBase»
0.0
prp-38 Pre-mRNA-splicing factor 38 Caenorhabditis elegans
TI:6239 None
 
PRP38_SCHPO
PomBase»
1.3
prp38 Pre-mRNA-splicing factor 38 Schizosaccharomyces pombe
TI:4896 None
 
PR38A_DANRE
ZFIN»
0.5
prpf38a Pre-mRNA-splicing factor 38A Danio rerio
TI:7955 None
 
Q86IV3_DICDI
dictyBase»
0.0
prpf38a Pre-mRNA-splicing factor 38 Dictyostelium discoideum
TI:44689 None
 
PR38B_DANRE
ZFIN»
0.0
prpf38b Pre-mRNA-splicing factor 38B Danio rerio
TI:7955 None
 
Q54J00_DICDI
dictyBase»
0.0
prpf38b Pre-mRNA-splicing factor 38 Dictyostelium discoideum
TI:44689 None