Collated Gene Ontology terms

Biological process: DNA binding(2021, 2025) zinc ion binding(2025) metal ion binding(2025) protein dimerization activity(2025) RNA polymerase II transcription regulatory region sequence-specific DNA binding(2014, 2021, 2025) RNA binding(2020, 2025) transcription cis-regulatory region binding(2020, 2025) identical protein binding(2020, 2025) DNA-binding transcription activator activity, RNA polymerase II-specific(2021, 2025) peptidase activity(2025)
hydrolase activity2025 cysteine-type peptidase activity2025 nucleic acid binding2025 sequence-specific DNA binding2025 DNA-binding transcription factor activity2025 RNA-DNA hybrid ribonuclease activity2025 DNA-binding transcription factor activity, RNA polymerase II-specific2019

Molecular function: DNA-templated transcription2025 post-embryonic development2005, 2014, 2025 regulation of transcription by RNA polymerase II2020, 2023 positive regulation of transcription by RNA polymerase II2020, 2025 proteolysis2025 regulation of cell division2011, 2025 vulval cell fate specification2011, 2025 regulation of DNA-templated transcription2025 molting cycle, collagen and cuticulin-based cuticle2011, 2025 negative regulation of distal tip cell migration2021
DNA-templated transcription termination2025 DNA integration2025

Cellular component: nucleus2012, 2014, 2018, 2020, 2021, 2023, 2025 cytoplasm2010, 2012, 2020, 2021, 2025 nucleoplasm2024, 2025 photoreceptor inner segment2025 cytosol2019 chromatin2019

Phylogenetic distribution

Chordates: 21/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 3/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 1/3 
Excavates: 0/4 
Harosa: 1/4 
Hacrobia: 0/0 
Plants: 33/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 0 2 4 6 8 10 Knownness

Click here to switch to the previous version of the database.

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
ZBED4_HUMAN
Ensembl»
3.8
ZBED4 Zinc finger BED domain-containing protein 4 Homo sapiens
TI:9606 None
 
ZBED4_MOUSE
Ensembl»
4.5
Zbed4 Zinc finger BED domain-containing protein 4 Mus musculus
TI:10090 None
 
D3ZUV0_RAT
RGD»
3.0
Zbed4 Zinc finger, BED-type containing 4 Rattus norvegicus
TI:10116 None
   
A0A8V0Y3W0_CHICK
Ensembl»
0.0
ZBED4 Zinc finger BED-type containing 4 Gallus gallus
TI:9031 None
   
BED3_CAEEL
WormBase»
4.5
bed-3 Zinc finger BED domain-containing protein 3 Caenorhabditis elegans
TI:6239 None
 
DSLE_ARATH
TAIR»
1.6
HAT Zinc finger BED domain-containing
protein DAYSLEEPER (Transposase-like protein DAYSLEEPER)		 Arabidopsis thaliana
TI:3702 None
 
Q21374_CAEEL
WormBase»
0.5
CELE_K09A11.1 K09A11.1 BED-type domain-containing protein Caenorhabditis elegans
TI:6239 None
 
MIG39_CAEEL
WormBase»
0.8
mig-39 Zinc finger BED domain-containing protein
39 (Abnormal cell migration protein 39)		 Caenorhabditis elegans
TI:6239 None
 
F4ICA1_ARATH
TAIR»
0.0
At1g18560 BED zinc finger and
hAT dimerization domain-containing protein		 Arabidopsis thaliana
TI:3702 None
 
Q9VM61_DROME
FlyBase»
0.0
Dmel\CG13775 Uncharacterized protein, isoform A
(Uncharacterized protein, isoform B)		 Drosophila melanogaster
TI:7227 None
 
A0A8M9PRQ8_DANRE
ZFIN»
0.5
zbed4l1 Si:dkey-13n23.3 (Zinc finger
BED domain-containing protein 4)		 Danio rerio
TI:7955 None
 
A0AB32TM35_DANRE
euHCVdb»
0.0
LOC137490251 E3 SUMO-protein ligase ZBED1-like Danio rerio
TI:7955 None
   
Q17894_CAEEL
WormBase»
0.5
C10A4.1 CELE_C10A4.1 HAT C-terminal
dimerisation domain-containing protein		 Caenorhabditis elegans
TI:6239 None
 
Q18809_CAEEL
WormBase»
0.5
C53D6.6 CELE_C53D6.6 HAT C-terminal
dimerisation domain-containing protein		 Caenorhabditis elegans
TI:6239 None
 
Q5RFV1_DANRE
ZFIN»
0.0
zbed4 Zinc finger BED domain-containing protein
4 (Zinc finger, BED-type-containing 4)		 Danio rerio
TI:7955 None
 
A0A8M3B0Q8_DANRE
ZFIN»
0.0
LOC100334312 Uncharacterized protein Danio rerio
TI:7955 None