Collated Gene Ontology terms

Biological process: DNA binding(2023) protein dimerization activity(2023) metal ion binding(2023) RNA polymerase II transcription regulatory region sequence-specific DNA binding(2014, 2021, 2022, 2023) RNA binding(2020, 2023) transcription cis-regulatory region binding(2020, 2023) identical protein binding(2020, 2023) DNA-binding transcription activator activity, RNA polymerase II-specific(2021, 2023) nucleic acid binding(2023) RNA-DNA hybrid ribonuclease activity(2023)
DNA-binding transcription factor activity, RNA polymerase II-specific2019

Molecular function: regulation of transcription by RNA polymerase II2020 post-embryonic development2023 positive regulation of transcription by RNA polymerase II2020, 2023 nucleic acid metabolic process2023 regulation of cell division2011, 2022 vulval cell fate specification2011, 2022 negative regulation of distal tip cell migration2021, 2022 molting cycle, collagen and cuticulin-based cuticle2011, 2022 DNA integration2023

Cellular component: nucleus2012, 2020, 2021, 2022, 2023 cytoplasm2010, 2012, 2020, 2021, 2022, 2023 nucleoplasm2023 membrane2023 photoreceptor inner segment2023 chromatin2019

Phylogenetic distribution

Chordates: 19/21 
Echinoderms: 0/0 
Hemichordates: 1/1 
Annelids: 1/1 
Molluscs: 0/0 
Bryozoans: 0/0 
Platyhelminthes: 0/0 
Rotifers: 0/0 
Nematodes: 3/3 
Arthropods: 5/5 
Tardigrades: 0/0 
Placozoa: 1/1 
Cnidaria: 0/1 
Porifera: 0/0 
Choanoflagellates+: 2/1 
Dikarya: 0/14 
Fungi (other): 0/1 
Protozoa: 1/3 
Excavates: 0/4 
Harosa: 1/4 
Hacrobia: 0/0 
Plants: 32/39 
Archea: 0/8 
Bacteria: 0/35 

Find a cluster

Protein ID:
UniProt ID, accession, gene name or model org. database name
Cluster ID:
e.g. "UKP00123" or "123"

Download

Protein sequences (FASTA format)

Knownness history

2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 0 2 4 6 8 10 Knownness

Proteins

UniProt ID
Organism DB»		 Standard knownness clustom knownness Gene name Description Species  [Show all] GO terms Seq. links Protein domain links
F4ICA1_ARATH
TAIR»
0.0
At1g18560 BED zinc finger and
hAT dimerization domain-containing protein		 Arabidopsis thaliana
TI:3702 None
 
BED3_CAEEL
WormBase»
4.5
bed-3 Zinc finger BED domain-containing protein 3 Caenorhabditis elegans
TI:6239 None
 
MIG39_CAEEL
WormBase»
0.8
mig-39 Zinc finger BED domain-containing protein
39 (Abnormal cell migration protein 39)		 Caenorhabditis elegans
TI:6239 None
 
Q17894_CAEEL
WormBase»
0.5
C10A4.1 CELE_C10A4.1 HAT C-terminal
dimerisation domain-containing protein		 Caenorhabditis elegans
TI:6239 None
 
Q18809_CAEEL
WormBase»
0.5
C53D6.6 CELE_C53D6.6 HAT C-terminal
dimerisation domain-containing protein		 Caenorhabditis elegans
TI:6239 None
 
Q21374_CAEEL
WormBase»
0.5
CELE_K09A11.1 K09A11.1 BED-type domain-containing protein Caenorhabditis elegans
TI:6239 None
 
A0A0R4IPS8_DANRE
ZFIN»
0.5
si:dkeyp-106c3.2 Si:dkey-5n7.2 (Uncharacterized
protein si:dkeyp-106c3.2)		 Danio rerio
TI:7955 None
 
A0A8M2B1Y7_DANRE
CTD»
0.0
LOC101886897 Zinc finger BED domain-containing protein 1-like Danio rerio
TI:7955 None
   
A0A8M3B0Q8_DANRE
CTD»
0.0
LOC100334312 Zinc finger BED domain-containing protein 4-like Danio rerio
TI:7955 None 		     
A0A8M3B0W5_DANRE
CTD»
0.0
LOC103911321 Zinc finger BED domain-containing protein 4-like Danio rerio
TI:7955 None
   
A0A8M6YX04_DANRE
CTD»
0.0
LOC108180722 Zinc finger BED domain-containing protein 4-like Danio rerio
TI:7955 None
   
A0A8M6Z1Y5_DANRE
CTD»
0.0
LOC108179562 Zinc finger BED domain-containing protein 1-like Danio rerio
TI:7955 None
   
A0A8M6Z2R9_DANRE
CTD»
0.0
LOC108179993 Zinc finger BED domain-containing protein 1-like Danio rerio
TI:7955 None
   
A0A8M6Z2U7_DANRE
CTD»
0.0
LOC101884285 Zinc finger BED domain-containing protein 1-like Danio rerio
TI:7955 None
   
A0A8M9PAG6_DANRE
CTD»
0.0
LOC108180016 Zinc finger BED domain-containing protein 1-like Danio rerio
TI:7955 None
   
A0A8M9PDV6_DANRE
ZFIN»
0.5
si:dkey-109j17.5 Si:dkey-109j17.5 (Zinc finger
BED domain-containing protein 4)		 Danio rerio
TI:7955 None
 
A0A8M9PN68_DANRE
CTD»
0.0
LOC101885930 Zinc finger BED domain-containing
protein 4-like isoform X1		 Danio rerio
TI:7955 None 		     
A0A8M9PRQ8_DANRE
ZFIN»
0.5
si:dkey-13n23.3 Si:dkey-13n23.3 (Zinc finger
BED domain-containing protein 4-like)		 Danio rerio
TI:7955 None
 
A0A8M9PYK6_DANRE
CTD»
0.0
LOC110438673 Zinc finger BED domain-containing protein 1-like Danio rerio
TI:7955 None
   
A0A8M9QN30_DANRE
CTD»
0.0
si:ch211-152f22.4 Zinc finger BED
domain-containing protein RICESLEEPER 1-like		 Danio rerio
TI:7955 None
   
Q5RFV1_DANRE
ZFIN»
0.0
si:dkey-164m14.5 Zinc finger BED domain-containing protein 4 (Zinc finger BED
domain-containing protein 4 isoform X1) (Zinc finger, BED-type-containing 4)		 Danio rerio
TI:7955 None
 
Q0E8Q6_DROME
FlyBase»
0.5
DS00797.6 Uncharacterized protein, isoform B Drosophila melanogaster
TI:7227 None
 
Q9VM61_DROME
FlyBase»
0.0
Dmel\CG13775 Uncharacterized protein, isoform A
(Uncharacterized protein, isoform B)		 Drosophila melanogaster
TI:7227 None
 
A0A8V0Y3W0_CHICK
Ensembl»
0.0
ZBED4 Zinc finger BED-type containing 4 Gallus gallus
TI:9031 None
   
ZBED4_HUMAN
Ensembl»
3.8
ZBED4 Zinc finger BED domain-containing protein 4 Homo sapiens
TI:9606 None
 
ZBED4_MOUSE
Ensembl»
4.5
Zbed4 Zinc finger BED domain-containing protein 4 Mus musculus
TI:10090 None
 
D3ZUV0_RAT
RGD»
3.0
Zbed4 Zinc finger, BED-type containing 4 Rattus norvegicus
TI:10116 None